Opitutus terrae PB90-1

Gram-negativeCocciNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Opitutia

Order

Opitutales

Family

Opitutaceae

Genus

Opitutus

Description

Opitutus terrae (strain DSM 11246 / PB90-1) is a member of the Verrucomicrobia, a diverse phylum of organisms common in many terrestrial and aquatic habitats. This organism was isolated from rice paddy soil and has been detected in peat bog soil and other anoxic terrestrial environments. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassOpitutia
OrderOpitutales
FamilyOpitutaceae
GenusOpitutus
SpeciesOpitutus terrae
StrainPB90-1

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Opitutus terrae PB90-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Opitutus terrae PB90-1, complete sequence.

Gene Summary

Adenine Count

1032492 bp

Thymine Count

1032346 bp

Guanine Count

1959905 bp

Cytosine Count

1932862 bp

Genome Length

5957605 bp

Protein-coding Genes

4621 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysm peptidoglycan-binding domain-containing proteinOTER_RS07520Not AvailableNegative1846825 - 184788037815.7
lysm peptidoglycan-binding domain-containing proteinOTER_RS07525Not AvailableNegative1848135 - 184941244903.5
glycerol kinase glpkOTER_RS07530Not AvailableNegative1849717 - 185121354081.9
ymgg-like glycine zipper-containing proteinOTER_RS23870Not AvailablePositive1851411 - 185211224128.4
penicillin-binding protein activator lpobOTER_RS07540Not AvailablePositive1852207 - 185284223106.5
hypothetical proteinOTER_RS23875Not AvailablePositive1852845 - 185413746372.7
ycfl family proteinOTER_RS07550Not AvailablePositive1854173 - 185459815708.7
hypothetical proteinOTER_RS07555Not AvailablePositive1854701 - 185560932131.0
mate family efflux transporterOTER_RS07560Not AvailablePositive1855836 - 185719147182.3
duf167 domain-containing proteinOTER_RS07565Not AvailableNegative1857253 - 18575259745.91

Displaying genes 1501 – 1510 of 4692 in total

Metabolites

1715 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1715 metabolites

Health Effects

No health effects information available for this bacterium.