Pedococcus dokdonensis

sphereaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Intrasporangiaceae

Genus

Pedococcus

Description

Pedococcus dokdonensis is a Gram-positive, non-spore-forming bacterium characterized by its spherical morphology. This microbe is classified as aerobic, indicating that it requires oxygen for its metabolic processes. Optimal growth conditions for P. dokdonensis are observed at a temperature of 29.0 °C, suggesting a preference for moderate environmental temperatures. The spherical shape of P. dokdonensis positions it within the diverse group of lactic acid bacteria, which are known for their roles in fermentation and various industrial applications. Its Gram-positive nature implies a thick peptidoglycan layer in its cell wall, which is a common feature among bacteria in this group. The absence of sporulation indicates that P. dokdonensis relies on other survival strategies, potentially influencing its ecological niches and interactions within microbial communities. The traits of P. dokdonensis, particularly its aerobic metabolism and optimal growth temperature, suggest that it may thrive in environments where organic matter is present and oxygen levels are sufficient, such as in certain fermented food products or specific ecological niches. Understanding the physiological characteristics of P. dokdonensis can provide insights into its potential applications in food science and biotechnology, particularly in the development of fermentation processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyIntrasporangiaceae
GenusPedococcus
SpeciesPedococcus dokdonensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shapesphere
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedococcus dokdonensis strain DSM 22329 chromosome I.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3704 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrolipoyl dehydrogenase family proteinBLQ34_RS19250Not AvailablePositive1639322 - 164076150412.8
zinc metalloproteaseBLQ34_RS07870Not AvailablePositive1640881 - 164184634004.0
Trna-glyNot AvailableNot AvailablePositive1641905 - 1641975Not Available
Trna-proNot AvailableNot AvailablePositive1642064 - 1642137Not Available
trna (guanosine(46)-n7)-methyltransferase trmbBLQ34_RS07885Not AvailableNegative1642129 - 164279723614.5
antitoxinBLQ34_RS07890Not AvailablePositive1642944 - 16431477091.04
duf4395 domain-containing proteinBLQ34_RS07895Not AvailablePositive1643216 - 164372817784.2
pp2c family protein-serine/threonine phosphataseBLQ34_RS07900Not AvailableNegative1643782 - 164487638911.0
ribose-5-phosphate isomeraseBLQ34_RS07905Not AvailableNegative1645014 - 164548116395.3
dsba family proteinBLQ34_RS07910Not AvailableNegative1645578 - 164620422742.0

Displaying genes 1581 – 1590 of 3757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.