Pedococcus dokdonensis

sphereaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Intrasporangiaceae

Genus

Pedococcus

Description

Pedococcus dokdonensis is a Gram-positive, non-spore-forming bacterium characterized by its spherical morphology. This microbe is classified as aerobic, indicating that it requires oxygen for its metabolic processes. Optimal growth conditions for P. dokdonensis are observed at a temperature of 29.0 °C, suggesting a preference for moderate environmental temperatures. The spherical shape of P. dokdonensis positions it within the diverse group of lactic acid bacteria, which are known for their roles in fermentation and various industrial applications. Its Gram-positive nature implies a thick peptidoglycan layer in its cell wall, which is a common feature among bacteria in this group. The absence of sporulation indicates that P. dokdonensis relies on other survival strategies, potentially influencing its ecological niches and interactions within microbial communities. The traits of P. dokdonensis, particularly its aerobic metabolism and optimal growth temperature, suggest that it may thrive in environments where organic matter is present and oxygen levels are sufficient, such as in certain fermented food products or specific ecological niches. Understanding the physiological characteristics of P. dokdonensis can provide insights into its potential applications in food science and biotechnology, particularly in the development of fermentation processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyIntrasporangiaceae
GenusPedococcus
SpeciesPedococcus dokdonensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shapesphere
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedococcus dokdonensis strain DSM 22329 chromosome I.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3704 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3,4-dihydroxy-2-butanone-4-phosphate synthaseBLQ34_RS06265Not AvailableNegative1293789 - 129501543419.7
nicotinamide riboside transporter pnucBLQ34_RS06270Not AvailableNegative1295012 - 129572826870.4
riboflavin synthaseBLQ34_RS06275Not AvailableNegative1295725 - 129634221505.6
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdBLQ34_RS06280Not AvailableNegative1296342 - 129736435742.4
duf222 domain-containing proteinBLQ34_RS06285Not AvailablePositive1297982 - 129937350242.8
ribulose-phosphate 3-epimeraseBLQ34_RS06290Not AvailableNegative1299381 - 130003723311.6
tetratricopeptide repeat proteinBLQ34_RS06295Not AvailablePositive1300178 - 130122737398.7
llm class flavin-dependent oxidoreductaseBLQ34_RS06300Not AvailableNegative1301235 - 130229637083.2
rsmb/nop family class i sam-dependent rna methyltransferaseBLQ34_RS06305Not AvailableNegative1302338 - 130386753905.6
methionyl-trna formyltransferaseBLQ34_RS06310Not AvailableNegative1303860 - 130481033045.6

Displaying genes 1261 – 1270 of 3757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.