Pseudovibrio sp. JE062

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Stappiaceae

Genus

Pseudovibrio

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyStappiaceae
GenusPseudovibrio
SpeciesPseudovibrio sp. JE062
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsponge
Biotic relationshipsponge symbiont
Host(s)Mycale laxissima
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudovibrio sp. JE062 ctg_1106541214819, whole genome shotgun

Gene Summary

Adenine Count

1320816 bp

Thymine Count

1393010 bp

Guanine Count

1547078 bp

Cytosine Count

1456174 bp

Genome Length

5717078 bp

Protein-coding Genes

4969 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system baseplate subunit tssg [pseudovibrio ascidiaceicola]-Not AvailablePositive1583934 - 158492337693.6
type vi secretion system-associated fha domain protein tagh [pseudovibrio axinellae]-Not AvailablePositive1584932 - 158643155567.6
type vi secretion system lipoprotein tssj [pseudovibrio axinellae]-Not AvailablePositive1586497 - 158705720665.0
type vi secretion system baseplate subunit tssk [roseibium sediminis]-Q9I753Positive1587123 - 158843649284.8
multispecies: dotu family type iv/vi secretion system protein [pseudovibrio]-Not AvailablePositive1588436 - 158925431327.6
type vi secretion system atpase tssh [pseudovibrio denitrificans]-Not AvailablePositive1589270 - 159197599418.3
sigma-54-dependent fis family transcriptional regulator [pseudovibrio denitrificans]-Q9KN48Positive1591986 - 159355157558.3
hypothetical protein [pseudovibrio ascidiaceicola]-Not AvailablePositive1593554 - 159441132145.6
pentapeptide repeat-containing protein [pseudovibrio axinellae]-Not AvailablePositive1594442 - 159534132537.5
duf1851 domain-containing protein [pseudomonas salomonii]-Not AvailableNegative1595409 - 159608025582.4

Displaying genes 1421 – 1430 of 5083 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

348 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 348 metabolites

Health Effects

No health effects information available for this bacterium.