Pseudovibrio sp. JE062

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Stappiaceae

Genus

Pseudovibrio

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyStappiaceae
GenusPseudovibrio
SpeciesPseudovibrio sp. JE062
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsponge
Biotic relationshipsponge symbiont
Host(s)Mycale laxissima
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudovibrio sp. JE062 ctg_1106541214819, whole genome shotgun

Gene Summary

Adenine Count

1320816 bp

Thymine Count

1393010 bp

Guanine Count

1547078 bp

Cytosine Count

1456174 bp

Genome Length

5717078 bp

Protein-coding Genes

4969 genes

Non-Coding Genes

114 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
malonyl-coa synthase [labrenzia alexandrii]-Not AvailableNegative1244610 - 124611855330.5
class i sam-dependent methyltransferase [pseudovibrio ascidiaceicola]-Not AvailablePositive1246322 - 124706227453.5
hypothetical protein [pseudovibrio stylochi]-Not AvailablePositive1247133 - 124764218315.5
lyse family translocator [pseudovibrio axinellae]-Not AvailableNegative1247690 - 124830421772.1
rna polymerase sigma factor sigj [pseudovibrio axinellae]-L0TCG5Negative1248389 - 124921630215.1
carboxymuconolactone decarboxylase family protein [pseudovibrio axinellae]-Not AvailableNegative1249264 - 124969516588.8
gnat family n-acetyltransferase [pseudovibrio ascidiaceicola]-Not AvailableNegative1249801 - 125030419212.0
glutathione-dependent disulfide-bond oxidoreductase [hirschia maritima]-Q46845Positive1250573 - 125143932421.1
yjji family glycine radical enzyme [pseudovibrio ascidiaceicola]-P37342Positive1252117 - 125365257533.4
yjjw family glycine radical enzyme activase [pseudovibrio axinellae]-P39409Positive1253624 - 125449031712.5

Displaying genes 1121 – 1130 of 5083 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

348 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 348 metabolites

Health Effects

No health effects information available for this bacterium.