Rhizorhabdus histidinilytica

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus histidinilytica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas histidinilytica strain UM2 genome assembly, contig:

Gene Summary

Adenine Count

892826 bp

Thymine Count

894003 bp

Guanine Count

1839144 bp

Cytosine Count

1847366 bp

Genome Length

5473339 bp

Protein-coding Genes

5156 genes

Non-Coding Genes

117 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized short protein ybdd, duf466 familySAMN06295920_104344Not AvailablePositive2304720 - 23049147561.06
transcriptional regulator, iclr familySAMN06295920_104345Not AvailableNegative2304918 - 230570028152.0
3-oxoadipate coa-transferase alpha subunitSAMN06295920_104346Not AvailablePositive2305811 - 230648823739.7
3-oxoadipate coa-transferase beta subunitSAMN06295920_104347Not AvailablePositive2306502 - 230715222838.8
3-oxoadipyl-coa thiolaseSAMN06295920_104348Not AvailablePositive2307334 - 230854241230.6
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN06295920_104349Not AvailableNegative2308555 - 230930726418.1
flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ssud and methylene tetrahydromethanopterin reductase)SAMN06295920_104350Not AvailableNegative2309304 - 231046141516.8
uncharacterized conserved protein glcg, duf336 familySAMN06295920_104351Not AvailableNegative2310470 - 231093715583.8
outer membrane receptor proteins, mostly fe transportSAMN06295920_104352Not AvailableNegative2310940 - 231327983799.1
transcriptional regulator, tetr familySAMN06295920_104353Not AvailableNegative2313377 - 231402422780.4

Displaying genes 2271 – 2280 of 5273 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.