Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Candidatus Berkiellales
Family
Candidatus Berkiellaceae
Genus
Candidatus Berkiella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Candidatus Berkiellales |
| Family | Candidatus Berkiellaceae |
| Genus | Candidatus Berkiella |
| Species | Candidatus Berkiella cookevillensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | biofilm sample from a cooling tower |
| Biotic relationship | Not Available |
| Host(s) | Amoeba, Acanthamoeba polyphaga |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
924980 bp
Thymine Count
927602 bp
Guanine Count
565100 bp
Cytosine Count
567154 bp
Genome Length
2984836 bp
Protein-coding Genes
2513 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alginate export family protein | CC99x_004030 | Not Available | Negative | 910525 - 911838 | 49836.1 |
| fused response regulator/phosphatase | CC99x_004035 | Not Available | Positive | 912182 - 913402 | 46179.9 |
| hypothetical protein | CC99x_004040 | Not Available | Positive | 913395 - 913880 | 18533.3 |
| type i secretion system permease/atpase | CC99x_004045 | Not Available | Positive | 913952 - 916198 | 82467.9 |
| hlyd family type i secretion periplasmic adaptor subunit | CC99x_004050 | Not Available | Positive | 916294 - 917568 | 47784.8 |
| response regulator transcription factor | CC99x_004055 | Not Available | Positive | 917802 - 918299 | 18694.4 |
| tolc family outer membrane protein | CC99x_004060 | Not Available | Positive | 919261 - 920658 | 51836.1 |
| transglutaminase-like cysteine peptidase | CC99x_004065 | Not Available | Positive | 920791 - 921486 | 26910.3 |
| eal domain-containing protein | CC99x_004070 | Not Available | Positive | 921828 - 923777 | 74065.5 |
| mfs transporter | CC99x_004075 | Not Available | Positive | 923882 - 925219 | 49700.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.