Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Candidatus Berkiellales
Family
Candidatus Berkiellaceae
Genus
Candidatus Berkiella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Candidatus Berkiellales |
| Family | Candidatus Berkiellaceae |
| Genus | Candidatus Berkiella |
| Species | Candidatus Berkiella cookevillensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | biofilm sample from a cooling tower |
| Biotic relationship | Not Available |
| Host(s) | Amoeba, Acanthamoeba polyphaga |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
924980 bp
Thymine Count
927602 bp
Guanine Count
565100 bp
Cytosine Count
567154 bp
Genome Length
2984836 bp
Protein-coding Genes
2513 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| septal ring lytic transglycosylase rlpa family protein | CC99x_003030 | Not Available | Negative | 674564 - 675481 | 33033.4 |
| lytic murein transglycosylase b | CC99x_003035 | Not Available | Negative | 675605 - 676660 | 39451.5 |
| duf2059 domain-containing protein | CC99x_003040 | Not Available | Positive | 677047 - 677580 | 20118.3 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | CC99x_003045 | Not Available | Negative | 678203 - 678673 | 17826.6 |
| ribosome silencing factor | CC99x_003050 | Not Available | Negative | 678673 - 679029 | 13448.2 |
| dna polymerase iii subunit delta | CC99x_003055 | Not Available | Negative | 679185 - 680213 | 38967.4 |
| hypothetical protein | CC99x_003060 | Not Available | Negative | 680200 - 680697 | 18884.8 |
| leucine--trna ligase | CC99x_003065 | Not Available | Negative | 680700 - 683171 | 94039.5 |
| hypothetical protein | CC99x_003070 | Not Available | Positive | 683234 - 683428 | 6356.88 |
| apolipoprotein n-acyltransferase | CC99x_003075 | Not Available | Negative | 683450 - 685069 | 60677.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.