Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Candidatus Berkiellales
Family
Candidatus Berkiellaceae
Genus
Candidatus Berkiella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Candidatus Berkiellales |
| Family | Candidatus Berkiellaceae |
| Genus | Candidatus Berkiella |
| Species | Candidatus Berkiella cookevillensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | biofilm sample from a cooling tower |
| Biotic relationship | Not Available |
| Host(s) | Amoeba, Acanthamoeba polyphaga |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
924980 bp
Thymine Count
927602 bp
Guanine Count
565100 bp
Cytosine Count
567154 bp
Genome Length
2984836 bp
Protein-coding Genes
2513 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam protein | CC99x_010100 | Not Available | Positive | 2402093 - 2403268 | 45024.6 |
| hypothetical protein | CC99x_010105 | Not Available | Positive | 2403474 - 2404169 | 26364.2 |
| type ii toxin-antitoxin system relb/dinj family antitoxin | CC99x_010110 | Not Available | Positive | 2404455 - 2404796 | 12921.3 |
| type ii toxin-antitoxin system yafq family toxin | CC99x_010115 | Not Available | Positive | 2404780 - 2405055 | 10730.9 |
| peptide chain release factor n(5)-glutamine methyltransferase | CC99x_010120 | Not Available | Negative | 2405098 - 2405934 | 31442.6 |
| peptide chain release factor 1 | CC99x_010125 | Not Available | Negative | 2405934 - 2407019 | 40938.6 |
| glutamyl-trna reductase | CC99x_010130 | Not Available | Negative | 2407021 - 2408277 | 46621.8 |
| tetratricopeptide repeat protein | CC99x_010135 | Not Available | Positive | 2408422 - 2410161 | 65114.1 |
| murein l,d-transpeptidase catalytic domain family protein | CC99x_010140 | Not Available | Negative | 2410290 - 2410997 | 26028.2 |
| lipoprotein insertase outer membrane protein lolb | CC99x_010145 | Not Available | Positive | 2411262 - 2411912 | 24117.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.