Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Candidatus Berkiellales
Family
Candidatus Berkiellaceae
Genus
Candidatus Berkiella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Candidatus Berkiellales |
| Family | Candidatus Berkiellaceae |
| Genus | Candidatus Berkiella |
| Species | Candidatus Berkiella cookevillensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | biofilm sample from a cooling tower |
| Biotic relationship | Not Available |
| Host(s) | Amoeba, Acanthamoeba polyphaga |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
924980 bp
Thymine Count
927602 bp
Guanine Count
565100 bp
Cytosine Count
567154 bp
Genome Length
2984836 bp
Protein-coding Genes
2513 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CC99x_008645 | Not Available | Negative | 2014857 - 2015618 | 28927.9 |
| hypothetical protein | CC99x_008650 | Not Available | Positive | 2015753 - 2016280 | 19328.6 |
| hypothetical protein | CC99x_008655 | Not Available | Positive | 2016360 - 2018003 | 61671.7 |
| s49 family peptidase | CC99x_008660 | Not Available | Negative | 2018287 - 2019237 | 34659.8 |
| rlua family pseudouridine synthase | CC99x_008665 | Not Available | Negative | 2019248 - 2020198 | 35995.6 |
| rne/rng family ribonuclease | CC99x_008670 | Not Available | Positive | 2020742 - 2023558 | 106500.0 |
| hypothetical protein | CC99x_008675 | Not Available | Positive | 2023774 - 2024232 | 17604.3 |
| efflux transporter outer membrane subunit | CC99x_008680 | Not Available | Negative | 2024406 - 2025761 | 49241.1 |
| macb family efflux pump subunit | CC99x_008685 | Not Available | Negative | 2025765 - 2027702 | 69164.9 |
| efflux rnd transporter periplasmic adaptor subunit | CC99x_008690 | Not Available | Negative | 2027699 - 2028865 | 42990.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.