Lysobacter capsici str. KNU-14

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici strain KNU-14 is a rod-shaped bacterium that thrives in chromium-contaminated environments, specifically in water and on the leaves of ready-to-eat lettuce plants. This strain has been isolated from both chromium-contaminated water sources and Cr-contaminated plant water, indicating its potential adaptability to environments polluted with heavy metals. The presence of L. capsici KNU-14 in these habitats suggests it may play a role in the microbial community associated with contaminated sites, potentially contributing to bioremediation processes. Its ability to inhabit both aquatic and plant surfaces raises interesting questions about its ecological interactions and survival strategies in adverse conditions. Understanding its metabolic pathways and ecological functions may provide insights into the mechanisms by which it copes with heavy metal stress, as well as its potential applications in environmental microbiology. This unique habitat preference not only highlights the versatility of L. capsici KNU-14 but also underscores the importance of studying microorganisms in contaminated ecosystems, where they may contribute to the detoxification of harmful substances.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
StrainKNU-14

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici str. KNU-14
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici strain KNU-14 chromosome, complete genome.

Gene Summary

Adenine Count

1039914 bp

Thymine Count

1041427 bp

Guanine Count

2096432 bp

Cytosine Count

2092644 bp

Genome Length

6270417 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
murr/rpir family transcriptional regulatorCNO08_RS13065Not AvailablePositive3341026 - 334189232289.6
inositol 2-dehydrogenaseCNO08_RS13070Not AvailablePositive3341885 - 334287735621.4
gfo/idh/moca family oxidoreductaseCNO08_RS13075Not AvailablePositive3342944 - 334396637573.8
dna gyrase subunit aCNO08_RS13080Not AvailableNegative3344093 - 3346843100797.0
s-methyl-5-thioribose-1-phosphate isomeraseCNO08_RS13085Not AvailableNegative3347488 - 334854637056.4
duf3011 domain-containing proteinCNO08_RS13090Not AvailableNegative3348707 - 334948027000.1
duf3011 domain-containing proteinCNO08_RS13095Not AvailableNegative3349670 - 335039825745.3
ef-p lysine aminoacylase epmaCNO08_RS13100Not AvailableNegative3350503 - 335150137128.2
nad-dependent dna ligase ligaCNO08_RS13105Not AvailableNegative3351498 - 335385585436.6
hypothetical proteinCNO08_RS13110Not AvailableNegative3354118 - 335462419031.7

Displaying genes 2671 – 2680 of 5190 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.