Lysobacter capsici str. KNU-14

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici strain KNU-14 is a rod-shaped bacterium that thrives in chromium-contaminated environments, specifically in water and on the leaves of ready-to-eat lettuce plants. This strain has been isolated from both chromium-contaminated water sources and Cr-contaminated plant water, indicating its potential adaptability to environments polluted with heavy metals. The presence of L. capsici KNU-14 in these habitats suggests it may play a role in the microbial community associated with contaminated sites, potentially contributing to bioremediation processes. Its ability to inhabit both aquatic and plant surfaces raises interesting questions about its ecological interactions and survival strategies in adverse conditions. Understanding its metabolic pathways and ecological functions may provide insights into the mechanisms by which it copes with heavy metal stress, as well as its potential applications in environmental microbiology. This unique habitat preference not only highlights the versatility of L. capsici KNU-14 but also underscores the importance of studying microorganisms in contaminated ecosystems, where they may contribute to the detoxification of harmful substances.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
StrainKNU-14

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici str. KNU-14
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici strain KNU-14 chromosome, complete genome.

Gene Summary

Adenine Count

1039914 bp

Thymine Count

1041427 bp

Guanine Count

2096432 bp

Cytosine Count

2092644 bp

Genome Length

6270417 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system lipoprotein tssjCNO08_RS12050Not AvailableNegative2967264 - 296790822846.4
tetratricopeptide repeat proteinCNO08_RS12055Not AvailablePositive2968137 - 296872120390.0
type vi secretion system contractile sheath small subunitCNO08_RS12060Not AvailablePositive2968764 - 296927018914.7
type vi secretion system contractile sheath large subunitCNO08_RS12065Not AvailablePositive2969273 - 297076654978.8
hcp family type vi secretion system effectorCNO08_RS12070Not AvailablePositive2970911 - 297144419345.7
type vi secretion system baseplate subunit tsseCNO08_RS12075Not AvailablePositive2971796 - 297228418115.6
type vi secretion system baseplate subunit tssfCNO08_RS12080Not AvailablePositive2972298 - 297413367961.5
type vi secretion system baseplate subunit tssgCNO08_RS12085Not AvailablePositive2974097 - 297518541272.3
type vi secretion system atpase tsshCNO08_RS12090Not AvailablePositive2975308 - 2978079100201.0
type vi secretion system vgr family proteinCNO08_RS12095Not AvailablePositive2978381 - 2981206100099.0

Displaying genes 2461 – 2470 of 5190 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.