Sphingopyxis terrae subsp. ummariensis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis terrae
Strainsubsp. ummariensis

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis ummariensis strain UI2 genome assembly, contig:

Gene Summary

Adenine Count

628266 bp

Thymine Count

616090 bp

Guanine Count

1150912 bp

Cytosine Count

1181743 bp

Genome Length

3577011 bp

Protein-coding Genes

3387 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna m(5)u-1939 methyltransferaseSAMN06295984_0282Not AvailableNegative294324 - 29552341916.6
yjef c-terminal region, hydroxyethylthiazole kinase-related/yjef n-terminal regionSAMN06295984_0283Not AvailableNegative295538 - 29689645297.7
hypothetical proteinSAMN06295984_0284Not AvailableNegative296931 - 29731712733.1
dihydroxyacid dehydrataseSAMN06295984_0285Not AvailableNegative297314 - 29917365237.2
predicted n-formylglutamate amidohydrolaseSAMN06295984_0286Not AvailableNegative299234 - 29996525398.5
4-diphosphocytidyl-2-c-methyl-d-erythritol kinaseSAMN06295984_0287Not AvailableNegative299962 - 30081028934.9
tetratricopeptide repeat-containing proteinSAMN06295984_0288Not AvailableNegative300818 - 30244957563.2
electron-transferring-flavoprotein dehydrogenaseSAMN06295984_0289Not AvailableNegative302493 - 30418761416.1
dna polymeraseSAMN06295984_0290Not AvailablePositive304288 - 30505227190.7
soluble lytic murein transglycosylaseSAMN06295984_0291Not AvailablePositive305056 - 30682864424.1

Displaying genes 301 – 310 of 3451 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

178 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da

Displaying 1–10 of 178 metabolites

Health Effects

No health effects information available for this bacterium.