Sphingobium sp. HDIP04

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. HDIP04
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. HDIP04 contig143, whole genome shotgun sequence.

Gene Summary

Adenine Count

835843 bp

Thymine Count

834978 bp

Guanine Count

1535055 bp

Cytosine Count

1535695 bp

Genome Length

4741576 bp

Protein-coding Genes

4548 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hemolysin erythrocyte lysis proteinL286_04590Not AvailableNegative876674 - 885421289169.0
hypothetical proteinL286_04595Not AvailableNegative886155 - 88679623339.4
lysr family transcriptional regulatorL286_04600Not AvailableNegative887088 - 88787927733.2
magnesium transporter apagL286_04605Not AvailableNegative887876 - 88827414619.2
o-succinylhomoserine sulfhydrylaseL286_04610Not AvailableNegative888308 - 88951643198.7
3-isopropylmalate dehydrogenaseL286_04615Not AvailableNegative889527 - 89057337179.7
dna repair protein recoL286_04620Not AvailableNegative890635 - 89140527156.1
histidine kinaseL286_04625Not AvailablePositive891581 - 89326662317.6
nagc family transcriptional regulatorL286_04630Not AvailablePositive893263 - 89392223716.1
peptidaseL286_04635Not AvailableNegative894113 - 89464318783.7

Displaying genes 1041 – 1050 of 4716 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.