Clostridium sp. M62/1

Anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. M62/1 is a gram-positive, rod-shaped bacterium classified as an obligate anaerobe, thriving in low-oxygen environments. This microbe prefers mesophilic conditions, typically thriving between 25°C and 37°C. As a chemoheterotroph, it derives energy by metabolizing organic compounds, making it dependent on external sources of carbon and energy. Clostridium species, including M62/1, are commonly found within the human gut flora, as well as in soil and various anaerobic environments such as wetlands and the intestines of animals. The gram-positive nature of Clostridium sp. M62/1 is characterized by a thick peptidoglycan layer in its cell wall, which retains the crystal violet dye used in gram staining, allowing for easy identification in laboratory settings. The rod shape facilitates motility through flagella, giving it the ability to colonize diverse environments. Being an obligate anaerobe means that Clostridium sp. M62/1 cannot survive in the presence of oxygen, relying instead on fermentation processes to produce energy. The anaerobic nature of this microbe has implications for its ecological role and potential industrial applications. For instance, Clostridium species are known for their ability to produce solvents and biofuels through fermentation processes, making them valuable in biotechnology. Furthermore, some strains of Clostridium are used in bioremediation to degrade pollutants in anaerobic environments. The metabolic versatility of Clostridium sp. M62/1 highlights its ecological significance, particularly in nutrient cycling and the breakdown of complex organic substances in anaerobic habitats. Researchers continue to explore its potential uses in the production of biofuels and other bioproducts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. M62/1
StrainNo strain

Profile

Physiology
Gram staining propertiesUncharacterized
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. M62/1


Gene Summary

Adenine Count

938394 bp

Thymine Count

975863 bp

Guanine Count

943470 bp

Cytosine Count

978967 bp

Genome Length

3836694 bp

Protein-coding Genes

4049 genes

Non-Coding Genes

198 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
IntegraseCLOM621_05654Not AvailablePositive697699 - 69873339621.0
putative methionine--trna ligase, beta subunitCLOM621_05655Not AvailableNegative698862 - 69933817346.9
IntegraseCLOM621_05656Not AvailableNegative699615 - 70085048215.7
hypothetical proteinCLOM621_05657Not AvailableNegative700883 - 7010596837.29
hypothetical proteinCLOM621_05658Not AvailableNegative701194 - 7014068310.97
hypothetical proteinCLOM621_05659Not AvailableNegative701390 - 70182715955.2
hypothetical proteinCLOM621_05660Not AvailableNegative701830 - 70220113992.3
dna-binding helix-turn-helix proteinCLOM621_05661Not AvailableNegative702212 - 70253211935.5
hypothetical proteinCLOM621_05662Not AvailableNegative702522 - 7027438174.33
hypothetical proteinCLOM621_05663Not AvailableNegative702737 - 70314415363.2

Displaying genes 1 – 10 of 4247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

311 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002026acrylateC3H3O2Chemical structure of acrylate10344-93-1
Average71.056Da
Monoisotopic71.013852917Da

Displaying 1–10 of 311 metabolites

Health Effects

No health effects information available for this bacterium.