Dyadobacter koreensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Dyadobacter

Description

Dyadobacter koreensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25°C. This organism is part of a group of soil-dwelling bacteria, which are recognized for their potential roles in nutrient cycling and soil health. The Gram-negative nature of D. koreensis suggests the presence of a complex outer membrane structure, which may contribute to its adaptability to various environmental conditions. The aerobic requirement indicates that D. koreensis relies on oxygen for its metabolic processes, which may influence its distribution in well-aerated soil environments. The optimal growth temperature of 25°C positions it within the mesophilic range, suggesting that it is well-adapted to temperate climates where soil temperatures frequently fall within this range. In the context of its ecological role, D. koreensis may participate in the degradation of organic matter in soil, thereby contributing to the nutrient dynamics essential for plant growth and microbial diversity. The specific metabolic pathways and interactions with other soil microorganisms, while not detailed here, are likely to play a significant role in its ecological function, making it a potentially valuable component of soil microbiomes. Understanding the characteristics of D. koreensis can provide insights into microbial community structures and their contributions to ecosystem processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusDyadobacter
SpeciesDyadobacter koreensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Dyadobacter koreensis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatAgbabu bitumen sediments
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyadobacter koreensis strain DSM 19938 genome assembly, contig:

Gene Summary

Adenine Count

2149081 bp

Thymine Count

2159768 bp

Guanine Count

1504187 bp

Cytosine Count

1522284 bp

Genome Length

7340093 bp

Protein-coding Genes

5989 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma-70 factor, ecf subfamilySAMN04487995_5186Not AvailableNegative6156612 - 615725325344.6
translation elongation factor ts (ef-ts)SAMN04487995_5187Not AvailableNegative6157388 - 615822429666.6
ssu ribosomal protein s2pSAMN04487995_5188Not AvailableNegative6158431 - 615924630604.2
small subunit ribosomal protein s9SAMN04487995_5189Not AvailableNegative6159443 - 615982914644.9
lsu ribosomal protein l13pSAMN04487995_5190Not AvailableNegative6159868 - 616031116547.1
protein of unknown functionSAMN04487995_5191Not AvailablePositive6160622 - 616136527905.6
predicted oxidoreductase, contains short-chain dehydrogenase (sdr) and duf2520 domainsSAMN04487995_5192Not AvailablePositive6161425 - 616223130310.1
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase)SAMN04487995_5193Not AvailablePositive6162294 - 616282119485.4
peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domainsSAMN04487995_5194Not AvailablePositive6162834 - 616395843233.6
polysaccharide deacetylaseSAMN04487995_5195Not AvailableNegative6164006 - 616479429861.9

Displaying genes 5051 – 5060 of 6032 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.