Dyadobacter koreensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Dyadobacter

Description

Dyadobacter koreensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25°C. This organism is part of a group of soil-dwelling bacteria, which are recognized for their potential roles in nutrient cycling and soil health. The Gram-negative nature of D. koreensis suggests the presence of a complex outer membrane structure, which may contribute to its adaptability to various environmental conditions. The aerobic requirement indicates that D. koreensis relies on oxygen for its metabolic processes, which may influence its distribution in well-aerated soil environments. The optimal growth temperature of 25°C positions it within the mesophilic range, suggesting that it is well-adapted to temperate climates where soil temperatures frequently fall within this range. In the context of its ecological role, D. koreensis may participate in the degradation of organic matter in soil, thereby contributing to the nutrient dynamics essential for plant growth and microbial diversity. The specific metabolic pathways and interactions with other soil microorganisms, while not detailed here, are likely to play a significant role in its ecological function, making it a potentially valuable component of soil microbiomes. Understanding the characteristics of D. koreensis can provide insights into microbial community structures and their contributions to ecosystem processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusDyadobacter
SpeciesDyadobacter koreensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Dyadobacter koreensis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatAgbabu bitumen sediments
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyadobacter koreensis strain DSM 19938 genome assembly, contig:

Gene Summary

Adenine Count

2149081 bp

Thymine Count

2159768 bp

Guanine Count

1504187 bp

Cytosine Count

1522284 bp

Genome Length

7340093 bp

Protein-coding Genes

5989 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferritin-like metal-binding protein ycieSAMN04487995_4510Not AvailablePositive5360896 - 536140519722.7
transcriptional regulator, arac familySAMN04487995_4511Not AvailableNegative5361521 - 536243535136.6
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN04487995_4512Not AvailableNegative5362477 - 536324427316.8
xylan 1,4-beta-xylosidaseSAMN04487995_4513Not AvailableNegative5363438 - 536513864230.3
hypothetical proteinSAMN04487995_4514Not AvailableNegative5365189 - 53653777225.76
transcriptional regulator, arac familySAMN04487995_4515Not AvailablePositive5366155 - 536691929487.5
uncharacterized conserved protein ybcv, duf1398 familySAMN04487995_4516Not AvailablePositive5367094 - 536748314555.2
nadph:quinone reductaseSAMN04487995_4517Not AvailableNegative5367807 - 536877834624.9
camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinasesSAMN04487995_4518Not AvailableNegative5369136 - 536974123857.6
hypothetical proteinSAMN04487995_4519Not AvailablePositive5369927 - 537067928675.2

Displaying genes 4401 – 4410 of 6032 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.