Dyadobacter koreensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Dyadobacter

Description

Dyadobacter koreensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25°C. This organism is part of a group of soil-dwelling bacteria, which are recognized for their potential roles in nutrient cycling and soil health. The Gram-negative nature of D. koreensis suggests the presence of a complex outer membrane structure, which may contribute to its adaptability to various environmental conditions. The aerobic requirement indicates that D. koreensis relies on oxygen for its metabolic processes, which may influence its distribution in well-aerated soil environments. The optimal growth temperature of 25°C positions it within the mesophilic range, suggesting that it is well-adapted to temperate climates where soil temperatures frequently fall within this range. In the context of its ecological role, D. koreensis may participate in the degradation of organic matter in soil, thereby contributing to the nutrient dynamics essential for plant growth and microbial diversity. The specific metabolic pathways and interactions with other soil microorganisms, while not detailed here, are likely to play a significant role in its ecological function, making it a potentially valuable component of soil microbiomes. Understanding the characteristics of D. koreensis can provide insights into microbial community structures and their contributions to ecosystem processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusDyadobacter
SpeciesDyadobacter koreensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Dyadobacter koreensis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatAgbabu bitumen sediments
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyadobacter koreensis strain DSM 19938 genome assembly, contig:

Gene Summary

Adenine Count

2149081 bp

Thymine Count

2159768 bp

Guanine Count

1504187 bp

Cytosine Count

1522284 bp

Genome Length

7340093 bp

Protein-coding Genes

5989 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pimeloyl-acp methyl ester carboxylesteraseSAMN04487995_3255Not AvailablePositive3921490 - 392226328986.1
cbs domain-containing proteinSAMN04487995_3256Not AvailablePositive3922380 - 392305124907.9
nad+ kinaseSAMN04487995_3257Not AvailablePositive3923131 - 392401232919.4
l-alanine-dl-glutamate epimeraseSAMN04487995_3258Not AvailablePositive3924033 - 392504337028.4
7-keto-8-aminopelargonate synthetaseSAMN04487995_3259Not AvailablePositive3925040 - 392614340760.4
sec-independent protein translocase protein tatcSAMN04487995_3260Not AvailableNegative3926176 - 392703632413.1
pyruvate dehydrogenase e1 component alpha subunitSAMN04487995_3261Not AvailableNegative3927174 - 392820238060.1
dna replication and repair protein recfSAMN04487995_3262Not AvailablePositive3928331 - 392941642435.8
glycogen debranching enzyme (alpha-1,6-glucosidase)SAMN04487995_3263Not AvailableNegative3929454 - 393188690795.7
mannose-1-phosphate guanylyltransferase (gdp)SAMN04487995_3264Not AvailableNegative3932047 - 393311440263.0

Displaying genes 3181 – 3190 of 6032 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.