Stenotrophomonas humi str. DSM 18929

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas humi str. DSM 18929 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This organism is part of the broader Stenotrophomonas genus, which is known for its metabolic versatility and adaptability to various environments. As a member of the Xanthomonadaceae family, S. humi str. DSM 18929 is characterized by its robust physiological traits that allow it to survive in diverse ecological niches. The bacterium's aerobic nature suggests that it requires oxygen for its metabolic processes, which may contribute to its role in environments where organic matter decomposition is prevalent. Given its optimal temperature of 25.0°C, S. humi str. DSM 18929 may be well-suited for life in temperate soils, where such conditions are commonly found. Its presence in soil ecosystems could imply a role in nutrient cycling or interactions with other microbial communities. Thus, this strain exemplifies the ecological significance of soil-dwelling bacteria in maintaining soil health and fertility, potentially influencing plant growth and ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas humi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas humi str. DSM 18929

Accession NumberLDJI00000000.1

Gene Summary

Adenine Count

741594 bp

Thymine Count

740476 bp

Guanine Count

1321325 bp

Cytosine Count

1318654 bp

Genome Length

4122049 bp

Protein-coding Genes

3499 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
membrane proteinABB26_00135Not Available+25219 - 2552710829.4
membrane proteinABB26_00140Not Available+25568 - 2594813921.7
membrane proteinABB26_00145Not Available-26073 - 2696032018.1
nadh pyrophosphataseABB26_00150Q7TX14-27031 - 2793932944.7
hypothetical proteinABB26_00155Not Available-28019 - 2835112317.8
iron-sulfur cluster insertion protein erpaABB26_00160Q8PQ32-28379 - 2876513670.9
cell shape determination protein ccmaABB26_00165Not Available-28797 - 2923415229.1
membrane proteinABB26_00170Not Available-29237 - 2997727188.9
membrane proteinABB26_00175Not Available+30152 - 3079321966.0
response regulator receiver proteinABB26_00180P45365+30825 - 3264566127.1

Displaying genes 31 – 40 of 3568 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

231 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da

Displaying 1–10 of 231 metabolites