Citrifermentans bemidjiense Bem

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Geobacterales

Family

Geobacteraceae

Genus

Citrifermentans

Description

Citrifermentans bemidjiense Bem is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an anaerobe, thriving optimally at a temperature of 30.0°C. This microbe is characterized as a chemolithotroph, indicating that it derives its energy from inorganic compounds, a trait that suggests its potential role in biogeochemical cycles within its terrestrial habitat. The anaerobic nature of C. bemidjiense Bem points to its adaptation to environments where oxygen is limited, allowing it to exploit niches that may be inhospitable to other microbial life. Its ability to utilize inorganic substances for energy could facilitate the breakdown of complex organic materials in the soil, thereby contributing to nutrient cycling and soil health. Furthermore, the unique combination of its rod shape and single-cell arrangement may influence its motility and interaction with the surrounding environment, potentially affecting its ecological role in terrestrial ecosystems. The adaptability of C. bemidjiense Bem to anaerobic conditions and its chemolithotrophic metabolism highlight its significance in the microbial community dynamics of soil environments, where it may play a crucial role in the transformation of nutrients and energy flow within these systems.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderGeobacterales
FamilyGeobacteraceae
GenusCitrifermentans
SpeciesCitrifermentans bemidjiense
StrainBem

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Citrifermentans bemidjiense Bem
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemolithotroph
PathogenicityNot Available

Genome Summary

Citrifermentans bemidjiense Bem, complete sequence.

Gene Summary

Adenine Count

920529 bp

Thymine Count

913222 bp

Guanine Count

1394155 bp

Cytosine Count

1387244 bp

Genome Length

4615150 bp

Protein-coding Genes

4055 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitGBEM_RS09520Q3A450Positive2197742 - 219886640768.0
radical sam proteinGBEM_RS09525Not AvailablePositive2198992 - 219992133663.3
carbamoyl-phosphate synthase large subunitGBEM_RS09530Q87WP4Positive2200142 - 2203390119036.0
transcription elongation factor greaGBEM_RS09535B3E3H5Positive2203500 - 220397617644.9
duf1858 domain-containing proteinGBEM_RS09540Not AvailablePositive2204102 - 22042966901.49
atp-dependent dna helicase recgGBEM_RS09545Q55681Positive2204354 - 220667285083.5
fibronectin type iii domain-containing proteinGBEM_RS09550Not AvailableNegative2207035 - 220764622367.1
higa family addiction module antitoxinGBEM_RS09555Not AvailableNegative2208046 - 220834811053.5
type ii toxin-antitoxin system rele/pare family toxinGBEM_RS09560Not AvailableNegative2208359 - 220864010613.7
hypothetical proteinGBEM_RS09565Not AvailablePositive2209150 - 220996830142.6

Displaying genes 1951 – 1960 of 2619 in total

Metabolites

1812 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 1812 metabolites

Health Effects

No health effects information available for this bacterium.