Nocardioides daphniae

rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides daphniae is a Gram-positive, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which may influence its survival strategies and ecological interactions. The Gram-positive nature of N. daphniae indicates that it possesses a thick peptidoglycan layer in its cell wall, a feature that is commonly associated with increased resistance to certain environmental stresses. Its rod shape may also confer advantages in mobility and nutrient absorption within its ecological niche. While the specific ecological role of Nocardioides daphniae remains to be fully elucidated, its aerobic metabolism suggests that it could play a significant role in nutrient cycling within oxygen-rich environments, potentially contributing to the degradation of organic matter. The optimal growth temperature of 29.0°C aligns with conditions often found in various aquatic environments, hinting at its possible association with freshwater ecosystems, where it may interact with other microorganisms and contribute to the overall microbial community dynamics. This positioning within the ecosystem may allow N. daphniae to participate in the breakdown of complex organic substances, thereby facilitating nutrient availability for other organisms.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides daphniae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides daphniae strain JCM 16608 chromosome, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3767 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinE2C04_RS20355Not AvailablePositive3268584 - 326919221621.8
branched-chain amino acid abc transporter permeaseE2C04_RS20360Not AvailablePositive3269243 - 326978519323.0
abc transporter atp-binding proteinE2C04_RS16075Not AvailablePositive3269782 - 327053727618.1
atp-binding cassette domain-containing proteinE2C04_RS16080Not AvailablePositive3270530 - 327122224455.9
urease subunit gammaE2C04_RS16085Not AvailablePositive3271224 - 327152610995.4
urease subunit betaE2C04_RS16090Not AvailablePositive3271572 - 327187110497.6
urease subunit alphaE2C04_RS16095Not AvailablePositive3271864 - 327356759216.4
urease accessory protein urefE2C04_RS16100Not AvailablePositive3273609 - 327425922585.3
urease accessory protein uregE2C04_RS16105Not AvailablePositive3274252 - 327500425775.6
urease accessory protein uredE2C04_RS16110Not AvailablePositive3275016 - 327577426102.9

Displaying genes 3501 – 3510 of 3806 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.