Nocardioides daphniae

rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides daphniae is a Gram-positive, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which may influence its survival strategies and ecological interactions. The Gram-positive nature of N. daphniae indicates that it possesses a thick peptidoglycan layer in its cell wall, a feature that is commonly associated with increased resistance to certain environmental stresses. Its rod shape may also confer advantages in mobility and nutrient absorption within its ecological niche. While the specific ecological role of Nocardioides daphniae remains to be fully elucidated, its aerobic metabolism suggests that it could play a significant role in nutrient cycling within oxygen-rich environments, potentially contributing to the degradation of organic matter. The optimal growth temperature of 29.0°C aligns with conditions often found in various aquatic environments, hinting at its possible association with freshwater ecosystems, where it may interact with other microorganisms and contribute to the overall microbial community dynamics. This positioning within the ecosystem may allow N. daphniae to participate in the breakdown of complex organic substances, thereby facilitating nutrient availability for other organisms.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides daphniae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides daphniae strain JCM 16608 chromosome, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3767 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadph-dependent 2,4-dienoyl-coa reductaseE2C04_RS01245Not AvailableNegative245387 - 24738470924.9
padr family transcriptional regulatorE2C04_RS01250Not AvailableNegative247381 - 24794421110.2
caib/baif coa transferase family proteinE2C04_RS01255Not AvailablePositive248059 - 24927041896.4
hypothetical proteinE2C04_RS01260Not AvailablePositive249415 - 24986114754.4
dead/deah box helicaseE2C04_RS01265Not AvailablePositive250087 - 25159852188.4
duf5701 family proteinE2C04_RS01270Not AvailablePositive251736 - 25239223475.2
type ii caax prenyl endopeptidase rce1 family proteinE2C04_RS01275Not AvailablePositive252402 - 25310325052.3
nad(p)h-binding proteinE2C04_RS01280Not AvailableNegative253114 - 25401332297.7
pyridoxamine 5'-phosphate oxidase family proteinE2C04_RS01285Not AvailablePositive254190 - 25460915882.8
padr family transcriptional regulatorE2C04_RS01290Not AvailablePositive254840 - 25545122305.3

Displaying genes 281 – 290 of 3806 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.