Delftia acidovorans SPH-1

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Delftia

Description

Delftia acidovorans SPH-1 is a Gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, is classified as a heterotroph, and is an obligate aerobe. As a member of the *Delftia* genus, *D. acidovorans SPH-1* is primarily found in soil and aquatic environments, where it plays a significant role in nutrient cycling. This microbe exhibits a robust metabolic versatility, enabling it to utilize a wide range of organic compounds for growth. As a heterotroph, it derives its energy and carbon from organic sources rather than through photosynthesis or inorganic materials. The obligate aerobic nature of *D. acidovorans SPH-1* means that it requires oxygen for respiration, making it more prevalent in oxygen-rich environments such as moistened soils, sediment, and water bodies. This trait assures its competitive advantage in the ecological niches it inhabits. Microscopically, *D. acidovorans SPH-1* appears as straight rods, typically measuring 0.5 to 1.0 micrometers in width and 1.0 to 3.0 micrometers in length. This morphology aids in mobility within various substrates, allowing the bacterium to exploit its environment effectively.A notable feature of *Delftia acidovorans SPH-1* is its capacity to degrade a variety of pollutants, including aromatic compounds, which positions it as a potential agent for bioremediation processes. Furthermore, this organism has shown promise in industrial applications, particularly in the bioconversion of waste materials due to its metabolic versatility. Its ability to thrive in diverse environments makes it a subject of interest for studies in microbial ecology and environmental biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusDelftia
SpeciesDelftia acidovorans
StrainSPH-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Delftia acidovorans SPH-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Delftia acidovorans SPH-1, complete sequence.

Gene Summary

Adenine Count

1131307 bp

Thymine Count

1137417 bp

Guanine Count

2258679 bp

Cytosine Count

2240111 bp

Genome Length

6767514 bp

Protein-coding Genes

5946 genes

Non-Coding Genes

345 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribbon-helix-helix protein, copg familyDACI_RS13550Not AvailableNegative2968650 - 296911417343.7
conjugal transfer protein tragDACI_RS13555Not AvailableNegative2969111 - 297112073414.8
eexn family lipoproteinDACI_RS31215Not AvailableNegative2971337 - 29715648537.29
lysr family transcriptional regulatorDACI_RS13560Not AvailableNegative2971590 - 297250433798.0
diacylglycerol kinaseDACI_RS31220Not AvailableNegative2972547 - 297296915654.2
phosphoethanolamine transferaseDACI_RS13565Not AvailableNegative2972981 - 297465462583.0
phosphatase pap2 family proteinDACI_RS31225Not AvailableNegative2974651 - 297543929184.9
tolc family proteinDACI_RS13570Not AvailableNegative2975420 - 297671847014.9
duf3240 family proteinDACI_RS13575Not AvailableNegative2976715 - 297703512014.6
efflux rnd transporter permease subunitDACI_RS13580Not AvailableNegative2977032 - 2980127109345.0

Displaying genes 3031 – 3040 of 6291 in total

Metabolites

2239 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 2239 metabolites

Health Effects

No health effects information available for this bacterium.