Paraburkholderia phytofirmans PsJN

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia phytofirmans PsJN is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments, with an optimal growth temperature of 30°C. As a nonsporulating organism, it relies on vegetative growth rather than sporulation for survival and propagation. This species is strictly aerobic, indicating that it requires oxygen for its metabolic processes. The ecological role of Paraburkholderia phytofirmans PsJN may extend to interactions with plant systems, given its terrestrial habitat. Its ability to thrive in aerobic conditions suggests that it could be involved in soil nutrient cycling and potentially in enhancing plant growth through various mechanisms, including nitrogen fixation or promotion of root health. Further research into its specific interactions with plant hosts could provide valuable insights into its contributions to soil health and plant-microbe interactions in terrestrial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia phytofirmans
StrainPsJN

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Paraburkholderia phytofirmans PsJN
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Arabidopsis thaliana
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia phytofirmans PsJN chromosome 1, complete

Gene Summary

Adenine Count

833314 bp

Thymine Count

838565 bp

Guanine Count

1399240 bp

Cytosine Count

1396418 bp

Genome Length

4467537 bp

Protein-coding Genes

3943 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate-alanine antiporterBPHYT_RS03845Q5NLV5Positive869125 - 87080758682.5
bifunctional aspartate transaminase/aspartate 4-decarboxylaseBPHYT_RS03850Q53IZ1Positive870897 - 87256162543.2
alanine--glyoxylate aminotransferase family proteinBPHYT_RS03855Q58369Positive872727 - 87396543491.9
mfs transporterBPHYT_RS03860Q62I47Negative874098 - 87530941348.3
xanthine dehydrogenase small subunitBPHYT_RS03865Q12553Positive875700 - 87722355495.3
xanthine dehydrogenase molybdopterin binding subunitBPHYT_RS03870Q00519Positive877257 - 87962385717.7
xanthine dehydrogenase accessory protein xdhcBPHYT_RS03875Not AvailablePositive879693 - 88025920636.2
lysr substrate-binding domain-containing proteinBPHYT_RS03880Q02876Negative880330 - 88131036304.9
2-hydroxychromene-2-carboxylate isomeraseBPHYT_RS03885Not AvailableNegative881554 - 88220424705.6
taxi family trap transporter solute-binding subunitBPHYT_RS03890Not AvailableNegative882298 - 88379153754.6

Displaying genes 831 – 840 of 7438 in total

Metabolites

2026 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 2026 metabolites

Health Effects

No health effects information available for this bacterium.