Thioalkalivibrio sp. K90mix

Gram-negativeRodMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Ectothiorhodospiraceae

Genus

Thioalkalivibrio

Description

Thioalkalivibrio sp. (strain K90mix) is an extremely salt tolerant (haloalkaliphilic), chemolithoautotrophic, sulfur-oxidizing Gram-negative bacterium isolated from a mixture of soda lake sediments. Thioalkalivibrio sp. uses CO2 as a carbon source and reduced sulfur compounds as an energy source. It has a pH optimum of 10 and can grow at salinities up to 4.3M of sodium and 3.6M of potassium. Thioalkalivibrio sp. can be used to remove noxious sulfur compounds from waste streams and energy carriers (bioremediation and carbon sequestration). (Adapted from: http://genome.jgi-psf.org/thi_k/thi_k.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyEctothiorhodospiraceae
GenusThioalkalivibrio
SpeciesThioalkalivibrio sp. K90mix
StrainK90mix

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Thioalkalivibrio sp. K90mix
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy source Chemolithoautotroph
PathogenicityNo

Genome Summary

Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence.

Gene Summary

Adenine Count

48374 bp

Thymine Count

43540 bp

Guanine Count

76899 bp

Cytosine Count

71443 bp

Genome Length

240256 bp

Protein-coding Genes

276 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
eal and hdod domain-containing proteinTK90_RS10020Not AvailablePositive2122640 - 212385444749.0
hypothetical proteinTK90_RS10025O30478Positive2123858 - 212480234634.1
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseTK90_RS10030Q602J1Positive2124795 - 212561030080.5
bifunctional gtp diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolaseTK90_RS10035P0AG25Negative2125652 - 212782380436.7
dna-directed rna polymerase subunit omegaTK90_RS10040B8GQN1Negative2127838 - 212811310552.5
guanylate kinaseTK90_RS10045Q6DB60Negative2128148 - 212879824094.2
Trna-proNot AvailableNot AvailablePositive2128884 - 2128960Not Available
octaprenyl diphosphate synthaseTK90_RS10055P0AD57Negative2129077 - 213004534973.8
50s ribosomal protein l21TK90_RS10060B8GQQ1Positive2130247 - 213055811373.8
50s ribosomal protein l27TK90_RS10065B8GQQ2Positive2130591 - 21308519359.2

Displaying genes 2311 – 2320 of 2925 in total

Metabolites

1630 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da

Displaying 1–10 of 1630 metabolites

Health Effects

No health effects information available for this bacterium.