Beijerinckia indica subsp. indica ATCC 9039

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Beijerinckiaceae

Genus

Beijerinckia

Description

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) was originally known as Azotobacter indicus. It produces a water-soluble extracellular polysaccharide that forms a biopolymer useful for a wide range of applications to textile printing, oil and adhesive industries. This strain belongs to the Beijerinckiaceae family, which includes both methanotrophic (bacteria able to oxidize methane) and nonmethanotrophic species (like Beijerinckia indica subsp. indica). Sequencing of strains from this family presents an ideal opportunity for a comparative genomic study into the evolution and biochemistry of obligate methanotrophy. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBeijerinckiaceae
GenusBeijerinckia
SpeciesBeijerinckia indica
StrainATCC 9039

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Beijerinckia indica subsp. indica ATCC 9039
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Beijerinckia indica subsp. indica ATCC 9039, complete sequence.

Gene Summary

Adenine Count

894110 bp

Thymine Count

896558 bp

Guanine Count

1188833 bp

Cytosine Count

1190652 bp

Genome Length

4170153 bp

Protein-coding Genes

3668 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription termination factor nusaBIND_RS05330Not AvailableNegative1204755 - 120637159925.8
ribosome maturation factor rimpBIND_RS05335Not AvailableNegative1206383 - 120732733841.1
nifu family proteinBIND_RS05340Not AvailablePositive1208115 - 120867820217.1
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsabBIND_RS05345Not AvailablePositive1208825 - 120960426209.6
gnat family n-acetyltransferaseBIND_RS05350Not AvailablePositive1209606 - 121009717479.0
peroxiredoxinBIND_RS05355Not AvailablePositive1210292 - 121084619516.5
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miabBIND_RS05360Not AvailablePositive1211013 - 121254555498.2
phoh family proteinBIND_RS05365Not AvailablePositive1212596 - 121362137278.7
rrna maturation rnase ybeyBIND_RS05370Not AvailablePositive1213638 - 121425521801.6
hemolysin family proteinBIND_RS05375Not AvailablePositive1214252 - 121528637193.4

Displaying genes 1061 – 1070 of 3958 in total

Metabolites

917 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da

Displaying 1–10 of 917 metabolites

Health Effects

No health effects information available for this bacterium.