Thermosipho melanesiensis BI429

Gram-negativeRodMotileAnaerobe

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Thermotogales

Family

Fervidobacteriaceae

Genus

Thermosipho

Description

Thermosipho melanesiensis (strain BI429 / DSM 12029) is a Gram-negative, thermophilic, anaerobic rod-shaped bacterium. It occurs generally singly or in pair. It possesses an outer sheath-like structure characteristic of the order Thermotogales. It grows between 45 and 89 Celsius degrees with an optimum at 70 degrees. Its optimal pH is 6.5 and optimal salinity is 30 grams of NaCl per liter. The type strain BI429 / DSM 12029 was isolated from the gills of a deep-sea vent hydrothermal mussel, Bathymodiolus brevior from the Lau Basin in the Southwestern Pacific Ocean. As its minimal growth temperature is 45 degrees, it was dormant in the gills of B. brevior. (EBI Integr8)

Taxonomy

KingdomThermotogati
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyFervidobacteriaceae
GenusThermosipho
SpeciesThermosipho melanesiensis
StrainBI429

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Thermosipho melanesiensis BI429
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature70
Temperature rangeThermophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Bathymodiolus brevior
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermosipho melanesiensis BI429

Accession NumberNC_009616.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1963 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abc transporter atp-binding proteinTMEL_RS00210Not Available-39157 - 3983425074.8
thiamine diphosphokinaseTMEL_RS00215Not Available+39891 - 4050223320.7
1-deoxy-d-xylulose-5-phosphate reductoisomeraseTMEL_RS00220Not Available+40481 - 4153939734.3
abc transporter substrate-binding proteinTMEL_RS00225Not Available+41784 - 4266532594.9
feccd family abc transporter permeaseTMEL_RS00230Not Available+42662 - 4363335273.6
had-iia family hydrolaseTMEL_RS00235Not Available+43659 - 4446229584.1
sigma-70 family rna polymerase sigma factorTMEL_RS00240Not Available+44469 - 4508924402.4
Tmrna,resume consensus sequence (at 88): gataagtgccaacgaagaNot AvailableNot Available+45118 - 45478Not Available
Trna-leuNot AvailableNot Available+45538 - 45625Not Available
6,7-dimethyl-8-ribityllumazine synthaseTMEL_RS00250Not Available-45676 - 4612816469.4

Displaying genes 41 – 50 of 237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

36 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da

Displaying 1–10 of 36 metabolites