Thermosipho melanesiensis BI429

Gram-negativeRodMotileAnaerobe

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Thermotogales

Family

Fervidobacteriaceae

Genus

Thermosipho

Description

Thermosipho melanesiensis (strain BI429 / DSM 12029) is a Gram-negative, thermophilic, anaerobic rod-shaped bacterium. It occurs generally singly or in pair. It possesses an outer sheath-like structure characteristic of the order Thermotogales. It grows between 45 and 89 Celsius degrees with an optimum at 70 degrees. Its optimal pH is 6.5 and optimal salinity is 30 grams of NaCl per liter. The type strain BI429 / DSM 12029 was isolated from the gills of a deep-sea vent hydrothermal mussel, Bathymodiolus brevior from the Lau Basin in the Southwestern Pacific Ocean. As its minimal growth temperature is 45 degrees, it was dormant in the gills of B. brevior. (EBI Integr8)

Taxonomy

KingdomThermotogati
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyFervidobacteriaceae
GenusThermosipho
SpeciesThermosipho melanesiensis
StrainBI429

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Thermosipho melanesiensis BI429
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature70
Temperature rangeThermophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermosipho melanesiensis BI429, complete sequence.

Gene Summary

Adenine Count

651632 bp

Thymine Count

662224 bp

Guanine Count

297368 bp

Cytosine Count

304014 bp

Genome Length

1915238 bp

Protein-coding Genes

1963 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter atp-binding proteinTMEL_RS00210Not AvailableNegative39157 - 3983425074.8
thiamine diphosphokinaseTMEL_RS00215Not AvailablePositive39891 - 4050223320.7
1-deoxy-d-xylulose-5-phosphate reductoisomeraseTMEL_RS00220Not AvailablePositive40481 - 4153939734.3
abc transporter substrate-binding proteinTMEL_RS00225Not AvailablePositive41784 - 4266532594.9
feccd family abc transporter permeaseTMEL_RS00230Not AvailablePositive42662 - 4363335273.6
had-iia family hydrolaseTMEL_RS00235Not AvailablePositive43659 - 4446229584.1
sigma-70 family rna polymerase sigma factorTMEL_RS00240Not AvailablePositive44469 - 4508924402.4
Tmrna,resume consensus sequence (at 88): gataagtgccaacgaagaNot AvailableNot AvailablePositive45118 - 45478Not Available
Trna-leuNot AvailableNot AvailablePositive45538 - 45625Not Available
6,7-dimethyl-8-ribityllumazine synthaseTMEL_RS00250Not AvailableNegative45676 - 4612816469.4

Displaying genes 41 – 50 of 237 in total

Metabolites

753 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 753 metabolites

Health Effects

No health effects information available for this bacterium.