Thermotoga petrophila RKU-1

Gram-negativeRodNon-motileAnaerobe

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Thermotogales

Family

Thermotogaceae

Genus

Thermotoga

Description

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) is a motile, anaerobic, heterotrophic, rod-shaped bacterium. It possesses an outer sheath-like structure characteristic of the order Thermotogales. It grows between 47 and 88 degrees Celsius, with an optimum at 80 degrees and at pH between 5.2 and 9, with an optimum at 7.0. It reduces elemental sulfur to hydrogen sulfide. Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) was isolated from a deep subterranean oil reservoir in Niigata, Japan. (EBI Integr8)

Taxonomy

KingdomThermotogati
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyThermotogaceae
GenusThermotoga
SpeciesThermotoga petrophila
StrainRKU-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Thermotoga petrophila RKU-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature80
Temperature rangeHyperthermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Thermotoga petrophila RKU-1, complete sequence.

Gene Summary

Adenine Count

491488 bp

Thymine Count

491363 bp

Guanine Count

413241 bp

Cytosine Count

427419 bp

Genome Length

1823511 bp

Protein-coding Genes

1810 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sdr family nad(p)-dependent oxidoreductaseTPET_RS03015Not AvailableNegative591218 - 59197326627.4
trap transporter large permease subunitTPET_RS03020Not AvailableNegative591989 - 59327246400.9
trap transporter small permeaseTPET_RS03025Not AvailableNegative593274 - 59375318733.6
c4-dicarboxylate trap transporter substrate-binding proteinTPET_RS03030Not AvailableNegative593816 - 59482638106.4
thua domain-containing proteinTPET_RS03035Not AvailablePositive594979 - 59556322972.2
heavy-metal-associated domain-containing proteinTPET_RS03040Not AvailableNegative595548 - 5957517786.3
heavy metal translocating p-type atpaseTPET_RS03045Not AvailableNegative595779 - 59795979473.0
carboxymuconolactone decarboxylase family proteinTPET_RS03050Not AvailableNegative597916 - 59824212174.5
shoct domain-containing proteinTPET_RS03055Not AvailableNegative598235 - 59848310252.5
yhs domain-containing proteinTPET_RS03060Not AvailablePositive598578 - 5987576887.12

Displaying genes 611 – 620 of 1862 in total

Metabolites

812 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 812 metabolites

Health Effects

No health effects information available for this bacterium.