Thermotoga petrophila RKU-1

Gram-negativeRodNon-motileAnaerobe

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Thermotogales

Family

Thermotogaceae

Genus

Thermotoga

Description

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) is a motile, anaerobic, heterotrophic, rod-shaped bacterium. It possesses an outer sheath-like structure characteristic of the order Thermotogales. It grows between 47 and 88 degrees Celsius, with an optimum at 80 degrees and at pH between 5.2 and 9, with an optimum at 7.0. It reduces elemental sulfur to hydrogen sulfide. Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) was isolated from a deep subterranean oil reservoir in Niigata, Japan. (EBI Integr8)

Taxonomy

KingdomThermotogati
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyThermotogaceae
GenusThermotoga
SpeciesThermotoga petrophila
StrainRKU-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Thermotoga petrophila RKU-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature80
Temperature rangeHyperthermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Thermotoga petrophila RKU-1, complete sequence.

Gene Summary

Adenine Count

491488 bp

Thymine Count

491363 bp

Guanine Count

413241 bp

Cytosine Count

427419 bp

Genome Length

1823511 bp

Protein-coding Genes

1810 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydroorotate dehydrogenaseTPET_RS02965Not AvailablePositive583730 - 58438324475.7
dihydroorotate dehydrogenaseTPET_RS02970Not AvailablePositive584371 - 58518329743.4
orotidine-5'-phosphate decarboxylaseTPET_RS02975Not AvailablePositive585180 - 58578522797.0
orotate phosphoribosyltransferaseTPET_RS02980Not AvailablePositive585782 - 58634520486.1
amidohydrolase family proteinTPET_RS02985Not AvailablePositive586342 - 58764649629.4
hypothetical proteinTPET_RS02990Not AvailablePositive587621 - 58829526777.0
dna-methyltransferaseTPET_RS02995Not AvailableNegative588286 - 58921235279.3
Trna-thrNot AvailableNot AvailablePositive589246 - 589322Not Available
phosphoglycerate dehydrogenaseTPET_RS03005Not AvailableNegative589362 - 59034535776.6
murr/rpir family transcriptional regulatorTPET_RS03010Not AvailableNegative590363 - 59120531117.7

Displaying genes 601 – 610 of 1862 in total

Metabolites

812 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 812 metabolites

Health Effects

No health effects information available for this bacterium.