Thermotoga petrophila RKU-1

Gram-negativeRodNon-motileAnaerobe

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Thermotogales

Family

Thermotogaceae

Genus

Thermotoga

Description

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) is a motile, anaerobic, heterotrophic, rod-shaped bacterium. It possesses an outer sheath-like structure characteristic of the order Thermotogales. It grows between 47 and 88 degrees Celsius, with an optimum at 80 degrees and at pH between 5.2 and 9, with an optimum at 7.0. It reduces elemental sulfur to hydrogen sulfide. Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) was isolated from a deep subterranean oil reservoir in Niigata, Japan. (EBI Integr8)

Taxonomy

Kingdom	Thermotogati
Phylum	Thermotogota
Class	Thermotogae
Order	Thermotogales
Family	Thermotogaceae
Genus	Thermotoga
Species	Thermotoga petrophila
Strain	RKU-1

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobe
Optimal temperature	80
Temperature range	Hyperthermophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Thermotoga petrophila RKU-1, complete sequence.

NC_009486.1

Gene Summary

Adenine Count

491488 bp

Thymine Count

491363 bp

Guanine Count

413241 bp

Cytosine Count

427419 bp

Genome Length

1823511 bp

Protein-coding Genes

1810 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
dak2 domain-containing protein	TPET_RS05395	Not Available	Positive	1087009 - 1088595	59580.2
tetratricopeptide repeat protein	TPET_RS05400	Not Available	Positive	1088592 - 1090208	63781.5
2,3-bisphosphoglycerate-independent phosphoglycerate mutase	TPET_RS05405	Not Available	Positive	1090211 - 1091416	44294.4
comec/rec2 family competence protein	TPET_RS05410	Not Available	Positive	1091413 - 1092588	44731.8
fur family transcriptional regulator	TPET_RS05415	Not Available	Negative	1092503 - 1092961	18284.2
transcription termination factor nusa	TPET_RS05420	Not Available	Negative	1092981 - 1094015	37939.4
ribosome maturation factor rimp	TPET_RS05425	Not Available	Negative	1094028 - 1094480	17665.1
Trna-ser	Not Available	Not Available	Positive	1094542 - 1094632	Not Available
argininosuccinate synthase	TPET_RS05435	Not Available	Positive	1094924 - 1096153	46069.4
argininosuccinate lyase	TPET_RS05440	Not Available	Positive	1096150 - 1097346	46055.8

Displaying genes 1091 – 1100 of 1862 in total

Pathways

521 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis

Glycolysis and Pyruvate Dehydrogenase

Palmitate Biosynthesis

Fatty Acid Elongation (Saturated)

tRNA Charging

Glycine Biosynthesis

Show All 521 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000274	aldehydo-D-galacturonateC6H9O7	Not available	Average193.132Da Monoisotopic193.0353762Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001003	phthalateC8H4O4	Not available	Average164.117Da Monoisotopic164.0120558Da
BASm0001111	keto-D-tagaturonateC6H9O7	Not available	Average193.132Da Monoisotopic193.0353762Da
BASm0001142	butanoateC4H7O2	Not available	Average87.099Da Monoisotopic87.045153045Da
BASm0001225	dodecanoateC12H23O2	Not available	Average199.3098Da Monoisotopic199.169805Da
BASm0001415	beta-L-rhamnoseC6H12O5	Not available	Average164.1565Da Monoisotopic164.0684735Da

Displaying 1–10 of 812 metabolites

Health Effects

No health effects information available for this bacterium.