Planktothrix agardhii NIVA-CYA 126/8

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Oscillatoriales

Family

Microcoleaceae

Genus

Planktothrix

Description

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderOscillatoriales
FamilyMicrocoleaceae
GenusPlanktothrix
SpeciesPlanktothrix agardhii
StrainNIVA-CYA 126/8

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planktothrix agardhii NIVA-CYA 126/8 plasmid pPA115, whole genome

Gene Summary

Adenine Count

36673 bp

Thymine Count

36571 bp

Guanine Count

23998 bp

Cytosine Count

22327 bp

Genome Length

119569 bp

Protein-coding Genes

106 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)h dehydrogenase subunit ndhsA19Y_RS17170Not AvailableNegative3888214 - 38884117158.62
duf29 domain-containing proteinA19Y_RS17175Not AvailablePositive3889167 - 388963718146.6
hypothetical proteinA19Y_RS17180Not AvailablePositive3889738 - 38899959559.33
type ii toxin-antitoxin system vapc family toxinA19Y_RS17185Not AvailablePositive3889992 - 389041415799.5
folylpolyglutamate synthase/dihydrofolate synthase family proteinA19Y_RS17190Not AvailablePositive3890420 - 389166746049.9
sh3 domain-containing proteinA19Y_RS17195Not AvailableNegative3891773 - 389242623415.1
phenylalanine--trna ligase subunit alphaA19Y_RS17200Not AvailableNegative3892465 - 389346637407.7
5'/3'-nucleotidase sureA19Y_RS17205Not AvailablePositive3893843 - 389463729050.9
translation initiation factor if-3A19Y_RS17210Not AvailableNegative3894866 - 389539920661.3
alpha/beta fold hydrolaseA19Y_RS17215Not AvailablePositive3895552 - 389647534657.2

Displaying genes 3671 – 3680 of 4565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

32 records
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Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001330N-acetyl-D-hexosamineC8H15NO6Chemical structure of N-acetyl-D-hexosamineNot available
Average221.209Da
Monoisotopic221.089937207Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001786(S,S)-tartrateC4H4O6Chemical structure of (S,S)-tartrateNot available
Average148.071Da
Monoisotopic148.001885Da
BASm0001789(3R)-citramalateC5H6O5Chemical structure of (3R)-citramalateNot available
Average146.099Da
Monoisotopic146.0226205Da

Displaying 1–10 of 32 metabolites

Health Effects

No health effects information available for this bacterium.