Hydrogenobaculum sp. Y04AAS1

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Aquificota

Class

Aquificia

Order

Aquificales

Family

Aquificaceae

Genus

Hydrogenobaculum

Description

Hydrogenobaculum sp. (strain Y04AAS1) is a terrestrial thermoacidophile chemolithoautotrophic bacterium isolated from Obsidian Pool, Yellowstone National Park, a terrestrial hot spring. It grows optimally at 58 degrees Celsius and pH 4, and acquires energy through the oxidation of hydrogen (??????knallgas?????? reaction) or reduced sulfur compounds. Like all Aquificaceae, Hydrogenobaculum sp. is able to fix CO2 using the ??????B-type?????? reductive tricarboxylic acid (TCA) cycle. It plays an important role in the biogeochemical cycling in these hot Springs. (modified from PubMed 16988757 and 19136599). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumAquificota
ClassAquificia
OrderAquificales
FamilyAquificaceae
GenusHydrogenobaculum
SpeciesHydrogenobaculum sp. Y04AAS1
StrainY04AAS1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature58
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrogenobaculum sp. Y04AAS1, complete sequence.

Gene Summary

Adenine Count

503585 bp

Thymine Count

512485 bp

Guanine Count

273361 bp

Cytosine Count

270083 bp

Genome Length

1559514 bp

Protein-coding Genes

1628 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pa2779 family proteinHY04AAS1_RS05025Not AvailablePositive931928 - 93230513854.5
cysteine peptidase family c39 domain-containing proteinHY04AAS1_RS05030Not AvailablePositive932335 - 93280518156.3
lysine--trna ligaseHY04AAS1_RS05035Not AvailablePositive932830 - 93453966299.7
biotin synthase biobHY04AAS1_RS05040Not AvailablePositive934606 - 93560137295.0
deaminaseHY04AAS1_RS05045Not AvailablePositive935592 - 93603516947.8
secondary thiamine-phosphate synthase enzyme yjbqHY04AAS1_RS05050Not AvailablePositive936040 - 93644114799.9
rip metalloprotease rsepHY04AAS1_RS05055Not AvailablePositive936438 - 93775448546.6
ornithine carbamoyltransferaseHY04AAS1_RS05060Not AvailablePositive937772 - 93871035501.4
abc transporter transmembrane domain-containing proteinHY04AAS1_RS05065Not AvailablePositive938682 - 94037964389.9
duf4416 family proteinHY04AAS1_RS05070Not AvailableNegative940372 - 94086319846.1

Displaying genes 1021 – 1030 of 1681 in total

Metabolites

172 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da

Displaying 1–10 of 172 metabolites

Health Effects

No health effects information available for this bacterium.