Pseudomonas protegens

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas protegens is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic heterotroph, utilizing organic compounds for energy. This versatile microbe thrives optimally at a temperature of 25.0 degrees Celsius and is found in a variety of habitats, suggesting its adaptability to diverse environmental conditions. Pseudomonas protegens is recognized for its metabolic versatility, allowing it to exploit a wide range of organic substrates, which may contribute to its ecological success in various niches, including soil and water environments. The bacterium’s aerobic nature indicates a reliance on oxygen for respiration, which may influence its distribution in environments with varying levels of oxygen availability. The ability of Pseudomonas protegens to thrive in multiple habitats highlights its potential role in biogeochemical cycles and its interactions within microbial communities. Notably, this species has been studied for its potential applications in biocontrol, suggesting an ecological role in suppressing plant pathogens and influencing plant health. Thus, understanding the traits of Pseudomonas protegens contributes to insights into its ecological significance and possible applications in sustainable agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas protegens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas protegens
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Craugastor crassidigitus
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas protegens strain 14B2 14B2_NODE_309, whole genome

Gene Summary

Adenine Count

1353682 bp

Thymine Count

1369817 bp

Guanine Count

2253225 bp

Cytosine Count

2211833 bp

Genome Length

7226270 bp

Protein-coding Genes

5709 genes

Non-Coding Genes

150 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
inositol 2-dehydrogenaseBLX41_08785Not AvailableNegative1973499 - 197450936315.7
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)BLX41_08790Not AvailableNegative1974544 - 197648169958.5
xylose isomeraseBLX41_08795Not AvailableNegative1976626 - 197744730017.0
methylmalonate-semialdehyde dehydrogenase (acylating)BLX41_08800Not AvailableNegative1977484 - 197898353598.5
5-deoxy-glucuronate isomeraseBLX41_08805Not AvailableNegative1979027 - 197983329503.8
myo-inosose-2 dehydrataseBLX41_08810Not AvailableNegative1979830 - 198073833181.4
5-dehydro-2-deoxygluconokinaseBLX41_08815Not AvailableNegative1980869 - 198280971321.5
rpir family transcriptional regulatorBLX41_08820Not AvailablePositive1983122 - 198404234296.9
dhh family proteinBLX41_08825Not AvailableNegative1984039 - 198497134099.8
gntr family transcriptional regulatorBLX41_08830Not AvailableNegative1985054 - 198654153415.4

Displaying genes 1731 – 1740 of 5859 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0040552Staphylococcus epidermidisNot availableNot availableNot available
BASm0040716Clavariadelphus truncatusNot availableNot availableNot available

Displaying 1–2 of 2 metabolites

Health Effects

No health effects information available for this bacterium.