Gemmatimonas aurantiaca T-27

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Gemmatimonadota

Class

Gemmatimonadia

Order

Gemmatimonadales

Family

Gemmatimonadaceae

Genus

Gemmatimonas

Description

Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) is a phylogenetically novel aerobic rod-shaped motile Gram-negative bacterium isolated from an anaerobic-aerobic sequential batch reactor operated under enhanced biological phosphorus removal conditions for wastewater treatment. G. aurantiaca grows at 25-35 degrees Celsius with an optimum growth temperature of 30 degrees Celsius, whilst no growth is observed below 20 or above 37 degrees Celsius within 20 days incubation. The pH range for growth is 6.5-9.5, with an optimum at pH 7.0. G. aurantiaca is able to utilize a limited range of substrates, such as yeast extract, polypepton, succinate, acetate, gelatin and benzoate. It is also able to utilize the following substrates weakly: glucose, sucrose, galactose, melibiose, maltose, formate and b-hydroxybutyrate. (adapated from PMID: 12892144). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumGemmatimonadota
ClassGemmatimonadia
OrderGemmatimonadales
FamilyGemmatimonadaceae
GenusGemmatimonas
SpeciesGemmatimonas aurantiaca
StrainT-27

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Gemmatimonas aurantiaca T-27
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Gemmatimonas aurantiaca T-27


Gene Summary

Adenine Count

831995 bp

Thymine Count

824590 bp

Guanine Count

1487691 bp

Cytosine Count

1492688 bp

Genome Length

4636964 bp

Protein-coding Genes

3937 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
signal peptidase iiGAU_RS15425Not AvailableNegative3555957 - 355650519083.6
ribonuclease dGAU_RS15430Not AvailableNegative3556795 - 355796144018.4
ai-2e family transporterGAU_RS21185Not AvailablePositive3558025 - 355935346594.5
alpha/beta fold hydrolaseGAU_RS15440Not AvailablePositive3559350 - 356015028526.4
methyltransferase family proteinGAU_RS15445Not AvailablePositive3560205 - 356082223029.0
indolepyruvate ferredoxin oxidoreductase subunit alphaGAU_RS15450Not AvailableNegative3560928 - 35611919640.35
yhby family rna-binding proteinGAU_RS15455Not AvailableNegative3561252 - 356155711115.5
m23 family metallopeptidaseGAU_RS15460Not AvailableNegative3561554 - 356219822994.7
hypothetical proteinGAU_RS15465Not AvailableNegative3562239 - 356265215450.6
helix-turn-helix transcriptional regulatorGAU_RS15470Not AvailablePositive3562838 - 356350324010.2

Displaying genes 3091 – 3100 of 4001 in total

Metabolites

1675 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1675 metabolites

Health Effects

No health effects information available for this bacterium.