Gemmatimonas aurantiaca T-27

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Gemmatimonadota

Class

Gemmatimonadia

Order

Gemmatimonadales

Family

Gemmatimonadaceae

Genus

Gemmatimonas

Description

Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) is a phylogenetically novel aerobic rod-shaped motile Gram-negative bacterium isolated from an anaerobic-aerobic sequential batch reactor operated under enhanced biological phosphorus removal conditions for wastewater treatment. G. aurantiaca grows at 25-35 degrees Celsius with an optimum growth temperature of 30 degrees Celsius, whilst no growth is observed below 20 or above 37 degrees Celsius within 20 days incubation. The pH range for growth is 6.5-9.5, with an optimum at pH 7.0. G. aurantiaca is able to utilize a limited range of substrates, such as yeast extract, polypepton, succinate, acetate, gelatin and benzoate. It is also able to utilize the following substrates weakly: glucose, sucrose, galactose, melibiose, maltose, formate and b-hydroxybutyrate. (adapated from PMID: 12892144). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Gemmatimonadota
Class	Gemmatimonadia
Order	Gemmatimonadales
Family	Gemmatimonadaceae
Genus	Gemmatimonas
Species	Gemmatimonas aurantiaca
Strain	T-27

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

Image source: Wikipedia/Wikimedia

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobe
Optimal temperature	30
Temperature range	Mesophilic
Habitat	Not Available
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Gemmatimonas aurantiaca T-27

Gene Summary

Adenine Count

831995 bp

Thymine Count

824590 bp

Guanine Count

1487691 bp

Cytosine Count

1492688 bp

Genome Length

4636964 bp

Protein-coding Genes

3937 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
heat repeat domain-containing protein	GAU_RS14460	Not Available	Negative	3319018 - 3320856	66413.8
hypothetical protein	GAU_RS22490	Not Available	Negative	3320861 - 3321613	26626.7
rna polymerase sigma factor	GAU_RS14470	Not Available	Negative	3321661 - 3322275	22585.8
hypothetical protein	GAU_RS14475	Not Available	Negative	3322413 - 3323087	24505.5
hypothetical protein	GAU_RS14480	Not Available	Positive	3323158 - 3324459	47834.2
type b 50s ribosomal protein l31	GAU_RS14485	Not Available	Positive	3324650 - 3324895	9154.94
copd family protein	GAU_RS14490	Not Available	Negative	3324980 - 3325789	27770.8
copper resistance protein copc	GAU_RS14495	Not Available	Negative	3325789 - 3326199	14516.7
methanobactin export mate transporter mbnm	GAU_RS14500	Not Available	Negative	3326196 - 3327461	44874.2
mbnp family copper-binding protein	GAU_RS14505	Not Available	Negative	3327467 - 3328408	32312.2

Displaying genes 2891 – 2900 of 4001 in total

Pathways

1227 pathways

2,3-Dihydroxybenzoate Biosynthesis pathway thumbnail

2,3-Dihydroxybenzoate Biosynthesis

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides pathway thumbnail

Biosynthesis of Siderophore Group Nonribosomal Peptides

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis pathway thumbnail

Lysine Biosynthesis

Lysine Biosynthesis

Taurine Metabolism pathway thumbnail

Taurine Metabolism

Taurine Metabolism

Glycolysis and Pyruvate Dehydrogenase pathway thumbnail

Glycolysis and Pyruvate Dehydrogenase

Glycolysis and Pyruvate Dehydrogenase

Arginine Metabolism pathway thumbnail

Arginine Metabolism

Arginine Metabolism

Ornithine Metabolism pathway thumbnail

Ornithine Metabolism

Ornithine Metabolism

Proline Metabolism pathway thumbnail

Proline Metabolism

Proline Metabolism

Show All 1227 Pathways

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000428	3-oxoadipateC6H6O5		Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000553	biphenyl-2,3-diolC12H10O2		Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O		Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2		`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001225	dodecanoateC12H23O2		Not available	Average199.3098Da Monoisotopic199.169805Da
BASm0001244	2-succinylbenzoateC11H8O5		`27415-09-04`	Average220.181Da Monoisotopic220.038270517Da

Displaying 1–10 of 1675 metabolites

Health Effects

No health effects information available for this bacterium.