Gemmatimonas aurantiaca T-27

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Gemmatimonadota

Class

Gemmatimonadia

Order

Gemmatimonadales

Family

Gemmatimonadaceae

Genus

Gemmatimonas

Description

Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) is a phylogenetically novel aerobic rod-shaped motile Gram-negative bacterium isolated from an anaerobic-aerobic sequential batch reactor operated under enhanced biological phosphorus removal conditions for wastewater treatment. G. aurantiaca grows at 25-35 degrees Celsius with an optimum growth temperature of 30 degrees Celsius, whilst no growth is observed below 20 or above 37 degrees Celsius within 20 days incubation. The pH range for growth is 6.5-9.5, with an optimum at pH 7.0. G. aurantiaca is able to utilize a limited range of substrates, such as yeast extract, polypepton, succinate, acetate, gelatin and benzoate. It is also able to utilize the following substrates weakly: glucose, sucrose, galactose, melibiose, maltose, formate and b-hydroxybutyrate. (adapated from PMID: 12892144). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Gemmatimonadota
Class	Gemmatimonadia
Order	Gemmatimonadales
Family	Gemmatimonadaceae
Genus	Gemmatimonas
Species	Gemmatimonas aurantiaca
Strain	T-27

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

Image source: Wikipedia/Wikimedia

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobe
Optimal temperature	30
Temperature range	Mesophilic
Habitat	Not Available
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Gemmatimonas aurantiaca T-27

Gene Summary

Adenine Count

831995 bp

Thymine Count

824590 bp

Guanine Count

1487691 bp

Cytosine Count

1492688 bp

Genome Length

4636964 bp

Protein-coding Genes

3937 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
uma2 family endonuclease	GAU_RS13815	Not Available	Negative	3161744 - 3162301	20857.3
glutamine--trna ligase/yqey domain fusion protein	GAU_RS13820	Not Available	Negative	3162420 - 3164126	64765.5
hypothetical protein	GAU_RS13825	Not Available	Positive	3164318 - 3165580	46809.1
Trna-ala	Not Available	Not Available	Positive	3165847 - 3165919	Not Available
deoxyribodipyrimidine photo-lyase	GAU_RS13835	Not Available	Positive	3166115 - 3167602	55726.0
threonine/serine dehydratase	GAU_RS13840	Not Available	Positive	3167633 - 3168610	33652.7
kgg domain-containing protein	GAU_RS22910	Not Available	Negative	3168692 - 3169054	13174.6
ribonuclease z	GAU_RS13850	Not Available	Positive	3169336 - 3170280	34695.2
carbohydrate-binding domain-containing protein	GAU_RS13855	Not Available	Positive	3170383 - 3172242	61878.5
transporter	GAU_RS22825	Not Available	Negative	3172354 - 3172605	8790.34

Displaying genes 2761 – 2770 of 4001 in total

Pathways

1227 pathways

2,3-Dihydroxybenzoate Biosynthesis pathway thumbnail

2,3-Dihydroxybenzoate Biosynthesis

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides pathway thumbnail

Biosynthesis of Siderophore Group Nonribosomal Peptides

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis pathway thumbnail

Lysine Biosynthesis

Lysine Biosynthesis

Taurine Metabolism pathway thumbnail

Taurine Metabolism

Taurine Metabolism

Glycolysis and Pyruvate Dehydrogenase pathway thumbnail

Glycolysis and Pyruvate Dehydrogenase

Glycolysis and Pyruvate Dehydrogenase

Arginine Metabolism pathway thumbnail

Arginine Metabolism

Arginine Metabolism

Ornithine Metabolism pathway thumbnail

Ornithine Metabolism

Ornithine Metabolism

Proline Metabolism pathway thumbnail

Proline Metabolism

Proline Metabolism

Show All 1227 Pathways

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000428	3-oxoadipateC6H6O5		Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000553	biphenyl-2,3-diolC12H10O2		Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O		Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2		`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001225	dodecanoateC12H23O2		Not available	Average199.3098Da Monoisotopic199.169805Da
BASm0001244	2-succinylbenzoateC11H8O5		`27415-09-04`	Average220.181Da Monoisotopic220.038270517Da

Displaying 1–10 of 1675 metabolites

Health Effects

No health effects information available for this bacterium.