Gemmatimonas aurantiaca T-27

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Gemmatimonadota

Class

Gemmatimonadia

Order

Gemmatimonadales

Family

Gemmatimonadaceae

Genus

Gemmatimonas

Description

Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) is a phylogenetically novel aerobic rod-shaped motile Gram-negative bacterium isolated from an anaerobic-aerobic sequential batch reactor operated under enhanced biological phosphorus removal conditions for wastewater treatment. G. aurantiaca grows at 25-35 degrees Celsius with an optimum growth temperature of 30 degrees Celsius, whilst no growth is observed below 20 or above 37 degrees Celsius within 20 days incubation. The pH range for growth is 6.5-9.5, with an optimum at pH 7.0. G. aurantiaca is able to utilize a limited range of substrates, such as yeast extract, polypepton, succinate, acetate, gelatin and benzoate. It is also able to utilize the following substrates weakly: glucose, sucrose, galactose, melibiose, maltose, formate and b-hydroxybutyrate. (adapated from PMID: 12892144). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Gemmatimonadota
Class	Gemmatimonadia
Order	Gemmatimonadales
Family	Gemmatimonadaceae
Genus	Gemmatimonas
Species	Gemmatimonas aurantiaca
Strain	T-27

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

Image source: Wikipedia/Wikimedia

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobe
Optimal temperature	30
Temperature range	Mesophilic
Habitat	Not Available
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Gemmatimonas aurantiaca T-27

Gene Summary

Adenine Count

831995 bp

Thymine Count

824590 bp

Guanine Count

1487691 bp

Cytosine Count

1492688 bp

Genome Length

4636964 bp

Protein-coding Genes

3937 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
methylenetetrahydrofolate--trna-(uracil(54)- c(5))-methyltransferase (fadh(2)-oxidizing) trmfo	GAU_RS12905	Not Available	Negative	2938823 - 2940199	50216.1
type i dna topoisomerase	GAU_RS12910	Not Available	Negative	2940205 - 2942751	93634.0
duf494 family protein	GAU_RS12915	Not Available	Negative	2942756 - 2943184	15835.6
shikimate kinase	GAU_RS12920	Not Available	Negative	2943188 - 2943739	19871.5
chorismate synthase	GAU_RS12925	Not Available	Negative	2943748 - 2944944	42634.2
ynce family protein	GAU_RS12930	Not Available	Negative	2945079 - 2947490	86089.5
amin domain-containing protein	GAU_RS12935	Not Available	Negative	2947513 - 2949720	76338.3
hypothetical protein	GAU_RS12940	Not Available	Negative	2949717 - 2950241	18663.3
type 4a pilus biogenesis protein pilo	GAU_RS12945	Not Available	Negative	2950238 - 2950858	22078.4
piln domain-containing protein	GAU_RS12950	Not Available	Negative	2950871 - 2951632	27209.7

Displaying genes 2581 – 2590 of 4001 in total

Pathways

1227 pathways

2,3-Dihydroxybenzoate Biosynthesis pathway thumbnail

2,3-Dihydroxybenzoate Biosynthesis

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides pathway thumbnail

Biosynthesis of Siderophore Group Nonribosomal Peptides

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis pathway thumbnail

Lysine Biosynthesis

Lysine Biosynthesis

Taurine Metabolism pathway thumbnail

Taurine Metabolism

Taurine Metabolism

Glycolysis and Pyruvate Dehydrogenase pathway thumbnail

Glycolysis and Pyruvate Dehydrogenase

Glycolysis and Pyruvate Dehydrogenase

Arginine Metabolism pathway thumbnail

Arginine Metabolism

Arginine Metabolism

Ornithine Metabolism pathway thumbnail

Ornithine Metabolism

Ornithine Metabolism

Proline Metabolism pathway thumbnail

Proline Metabolism

Proline Metabolism

Show All 1227 Pathways

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000428	3-oxoadipateC6H6O5		Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000553	biphenyl-2,3-diolC12H10O2		Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O		Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2		`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001225	dodecanoateC12H23O2		Not available	Average199.3098Da Monoisotopic199.169805Da
BASm0001244	2-succinylbenzoateC11H8O5		`27415-09-04`	Average220.181Da Monoisotopic220.038270517Da

Displaying 1–10 of 1675 metabolites

Health Effects

No health effects information available for this bacterium.