Salinispora tropica CNB-440

Gram-positiverodMotileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micromonosporales

Family

Micromonosporaceae

Genus

Salinispora

Description

Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) is an aerobic seawater-requiring marine actinomycete isolated from coarse beach sand off the Bahamas. The genus Salinispora is distinct from other actinomycetes however in that it resides in ocean sediments and is the first bacterium of its type to require seawater for growth thus providing opportunities to study marine adaptations in Gram-positive bacteria. One significant feature of S. tropica is its ability to produce structurally unique secondary metabolites. This observation supports the exploitation of marine actinomycetes as a source of new medicines. The metabolites observed from S. tropica include salinosporamide A, a potent inhibitor of the 20S proteasome that is currently in human clinical trials for the treatment of cancer. Interestingly, it has been observed that the three closely related Salinispora species produce dramatically different suites of secondary metabolites. These metabolites represent the single most significant phenotypic difference observed among the three species and raise questions about the ecological roles and evolutionary significance of secondary metabolites. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusSalinispora
SpeciesSalinispora tropica
StrainCNB-440

Profile

Physiology
Gram staining propertiesPositive
Shaperod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Salinispora tropica CNB-440
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles - Clusters
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Salinispora tropica CNB-440

Accession NumberNC_009380.1

Gene Summary

Adenine Count

791604 bp

Thymine Count

791333 bp

Guanine Count

1803918 bp

Cytosine Count

1796476 bp

Genome Length

5183331 bp

Protein-coding Genes

4661 genes

Non-Coding Genes

105 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+578047 - 578058Not Available
Bbp50STROP_RS02540Not Available+583825 - 58416912540.1
hypothetical proteinSTROP_RS02545Not Available-584162 - 58444310653.4
AttlNot AvailableNot Available+584630 - 584699Not Available
hypothetical proteinSTROP_RS02555Not Available-585555 - 58638230448.2
glycine-rich domain-containing proteinSTROP_RS02560Not Available-586463 - 58693016625.6
xre family transcriptional regulatorSTROP_RS02565Not Available+587402 - 58842437214.3
flavin reductaseSTROP_RS23475Not Available-588475 - 58890016270.3
Dna binding proteinSTROP_RS02575Not Available+589581 - 59039329975.7
Hypothetical proteinSTROP_RS02580Not Available+590390 - 5905786579.65

Displaying genes 1 – 10 of 4766 in total

Pathways

722 pathways

Metabolites

59 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001369peroxynitriteNO3Chemical structure of peroxynitrite19059-14-4
Average62.0049Da
Monoisotopic61.987817871Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm00024581D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11Chemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideNot available
Average383.35Da
Monoisotopic383.142760629Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 59 metabolites