Thermofilum pendens Hrk 5

RodNon-motileAnaerobic

Kingdom

Thermoproteati

Phylum

Thermoproteota

Class

Thermoprotei

Order

Thermofilales

Family

Thermofilaceae

Genus

Thermofilum

Description

Thermofilum pendens (strain Hrk5) is a a sulfur-dependent, anaerobic heterotroph archaea. It forms long thin filaments and may have an unusual mode of reproduction in which spherical bulges form at one end of the cell. It is an extracellular commensal, requiring an extract of another crenarchaeota Thermoproteus tenax for growth, and the genome sequence reveals that biosynthetic pathways for purines, most amino acids, and most cofactors are absent. Besides the lack of biosynthesis, several nutrient transporters that are not found in any other crenarchaeote are present in T. pendens. It appears that T. pendens has adapted to life in an environment rich in nutrients and grows mainly by peptide fermentation. It was known previously to utilize peptides as an energy source, but the genome revealed a substantial ability to grow on carbohydrates. T. pendens may obtain energy from sulfur reduction with hydrogen and formate as electron donors. It may also be capable of sulfur-independent growth on formate with formate hydrogen lyase. (HAMAP: THEPD)

Taxonomy

KingdomThermoproteati
PhylumThermoproteota
ClassThermoprotei
OrderThermofilales
FamilyThermofilaceae
GenusThermofilum
SpeciesThermofilum pendens
StrainHrk 5

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature88
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermofilum pendens Hrk 5 plasmid pTPEN01, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

54 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lsm family proteinTPEN_RS02155Not AvailableNegative382800 - 3830218102.87
ribbon-helix-helix domain-containing proteinTPEN_RS02160Not AvailablePositive383140 - 3833317113.57
30s ribosomal protein s6eTPEN_RS02165Not AvailablePositive383514 - 38390914241.2
duf3883 domain-containing proteinTPEN_RS09690Not AvailableNegative384070 - 3842777524.23
hypothetical proteinTPEN_RS02170Not AvailablePositive384343 - 38579154510.0
translation initiation factor aif-1aTPEN_RS02175Not AvailablePositive385880 - 38619712073.8
thioredoxin family proteinTPEN_RS02180Not AvailableNegative386202 - 38654012454.3
flap endonuclease-1TPEN_RS02185Not AvailablePositive386639 - 38766438683.1
atp-dependent dna ligaseTPEN_RS02190Not AvailablePositive387736 - 38934961111.9
mbl fold metallo-hydrolaseTPEN_RS02195Not AvailablePositive389334 - 39031736862.2

Displaying genes 491 – 500 of 1961 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

20 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003747CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerolC52H83N3O13P2Chemical structure of CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerolNot available
Average1020.193Da
Monoisotopic1019.5412109Da
BASm0003997Fe(II)-heme oC49H56FeN4O5Chemical structure of Fe(II)-heme oNot available
Average836.856Da
Monoisotopic836.361104Da
BASm0004531(6S)-NADHXC21H29N7O15P2Chemical structure of (6S)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004532(6R)-NADHXC21H29N7O15P2Chemical structure of (6R)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004533(6S)-NADPHXC21H28N7O18P3Chemical structure of (6S)-NADPHXNot available
Average759.409Da
Monoisotopic759.0725624Da
BASm0004534(6R)-NADPHXC21H28N7O18P3Chemical structure of (6R)-NADPHXNot available
Average759.409Da
Monoisotopic759.072562403Da

Displaying 1–10 of 20 metabolites

Health Effects

No health effects information available for this bacterium.