Thermofilum pendens Hrk 5

RodNon-motileAnaerobic

Kingdom

Thermoproteati

Phylum

Thermoproteota

Class

Thermoprotei

Order

Thermofilales

Family

Thermofilaceae

Genus

Thermofilum

Description

Thermofilum pendens (strain Hrk5) is a a sulfur-dependent, anaerobic heterotroph archaea. It forms long thin filaments and may have an unusual mode of reproduction in which spherical bulges form at one end of the cell. It is an extracellular commensal, requiring an extract of another crenarchaeota Thermoproteus tenax for growth, and the genome sequence reveals that biosynthetic pathways for purines, most amino acids, and most cofactors are absent. Besides the lack of biosynthesis, several nutrient transporters that are not found in any other crenarchaeote are present in T. pendens. It appears that T. pendens has adapted to life in an environment rich in nutrients and grows mainly by peptide fermentation. It was known previously to utilize peptides as an energy source, but the genome revealed a substantial ability to grow on carbohydrates. T. pendens may obtain energy from sulfur reduction with hydrogen and formate as electron donors. It may also be capable of sulfur-independent growth on formate with formate hydrogen lyase. (HAMAP: THEPD)

Taxonomy

KingdomThermoproteati
PhylumThermoproteota
ClassThermoprotei
OrderThermofilales
FamilyThermofilaceae
GenusThermofilum
SpeciesThermofilum pendens
StrainHrk 5

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature88
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermofilum pendens Hrk 5 plasmid pTPEN01, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

54 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated carf protein csa3TPEN_RS06960Not AvailableNegative1312213 - 131286323387.7
pd-(d/e)xk nuclease family proteinTPEN_RS06965Not AvailableNegative1313241 - 131396328518.0
crispr system precrrna processing endoribonuclease ramp protein cas6TPEN_RS06970Not AvailableNegative1314088 - 131495731938.0
cas10/cmr2 second palm domain-containing proteinTPEN_RS06975Not AvailableNegative1315699 - 131845898987.8
crispr-associated ramp csm5 family proteinTPEN_RS06980Not AvailableNegative1318443 - 131954939570.9
hypothetical proteinTPEN_RS06985Not AvailableNegative1319551 - 132054934892.4
type iii-a crispr-associated ramp protein csm3TPEN_RS06990Not AvailableNegative1320555 - 132155036647.5
hypothetical proteinTPEN_RS06995Not AvailableNegative1321556 - 132197515505.8
aaa family atpaseTPEN_RS07000Not AvailablePositive1322020 - 132298835250.6
hypothetical proteinTPEN_RS07005Not AvailablePositive1322981 - 132345417605.4

Displaying genes 1471 – 1480 of 1961 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

20 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003747CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerolC52H83N3O13P2Chemical structure of CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerolNot available
Average1020.193Da
Monoisotopic1019.5412109Da
BASm0003997Fe(II)-heme oC49H56FeN4O5Chemical structure of Fe(II)-heme oNot available
Average836.856Da
Monoisotopic836.361104Da
BASm0004531(6S)-NADHXC21H29N7O15P2Chemical structure of (6S)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004532(6R)-NADHXC21H29N7O15P2Chemical structure of (6R)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004533(6S)-NADPHXC21H28N7O18P3Chemical structure of (6S)-NADPHXNot available
Average759.409Da
Monoisotopic759.0725624Da
BASm0004534(6R)-NADPHXC21H28N7O18P3Chemical structure of (6R)-NADPHXNot available
Average759.409Da
Monoisotopic759.072562403Da

Displaying 1–10 of 20 metabolites

Health Effects

No health effects information available for this bacterium.