Methanoculleus marisnigri JR1

Gram-negativeCocciNon-motileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanomicrobiales

Family

Methanomicrobiaceae

Genus

Methanoculleus

Description

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) is an anaerobic methanogenic archaeon phylogenetically associated with the order Methanomicrobiales. Methanoculleus marisnigri was first isolated from sediment from the Black Sea, but has also been identified in freshwater sediments. Members of the genus Methanoculleus are found commonly in marine and brackish environments, and they are among the most prevalent methanogens found in wastewater and sewage bioreactors and in landfills. Methanoculleus marisnigri can use hydrogen, formate, and secondary alcohols, such as propanol and butanol, for methanogenesis. A metabolic feature of Methanoculleus species and some closely related genera, but unique among the methanogens, is the ability to use ethanol and a variety of secondary alcohols as electron donors for methanogenesis, and this may contribute to their dominance in biomethanation processes. (HAMAP: METMJ)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanomicrobiales
FamilyMethanomicrobiaceae
GenusMethanoculleus
SpeciesMethanoculleus marisnigri
StrainJR1

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Methanoculleus marisnigri JR1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature21
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceLithotroph
PathogenicityNo

Genome Summary

Methanoculleus marisnigri JR1

Accession NumberNC_009051.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2465 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
orc1-type dna replication proteinMEMAR_RS00005Not Available+469 - 175248094.0
lrp/asnc family transcriptional regulatorMEMAR_RS00010Not Available+1757 - 224818698.4
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeMEMAR_RS00015Not Available+2259 - 341941917.0
adenylosuccinate synthetaseMEMAR_RS00020Not Available+4066 - 507636047.8
methytransferase partner trm112MEMAR_RS00025Not Available+5073 - 52586646.02
hypothetical proteinMEMAR_RS00030Not Available+5267 - 579119188.2
adenosylcobinamide-phosphate synthase cbibMEMAR_RS00035Not Available+5770 - 669032732.1
pyridoxal 5'-phosphate synthase lyase subunit pdxsMEMAR_RS00040Not Available+6696 - 759231569.4
pyridoxal 5'-phosphate synthase glutaminase subunit pdxtMEMAR_RS00045Not Available+7582 - 816020498.8
arsr/smtb family transcription factorMEMAR_RS00050Not Available-8169 - 853112929.0

Displaying genes 1 – 10 of 2518 in total

Pathways

23 pathways

Metabolites

134 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm00063042-iminoacetateC2H3NO2Chemical structure of 2-iminoacetateNot available
Average73.0507Da
Monoisotopic73.01637835Da
BASm00074555-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracilC16H22N4O7Chemical structure of 5-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracilNot available
Average382.373Da
Monoisotopic382.1488491Da
BASm0010316N(1)-(5-phospho-beta-D-ribosyl)glycinamideC7H14N2O8PChemical structure of N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average285.169Da
Monoisotopic285.049326Da
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014035Glycolic acidC2H4O3Chemical structure of Glycolic acid79-14-1
Average76.0514Da
Monoisotopic76.016043994Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da

Displaying 31–40 of 134 metabolites