Methanoculleus marisnigri JR1

Gram-negativeCocciNon-motileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanomicrobiales

Family

Methanomicrobiaceae

Genus

Methanoculleus

Description

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) is an anaerobic methanogenic archaeon phylogenetically associated with the order Methanomicrobiales. Methanoculleus marisnigri was first isolated from sediment from the Black Sea, but has also been identified in freshwater sediments. Members of the genus Methanoculleus are found commonly in marine and brackish environments, and they are among the most prevalent methanogens found in wastewater and sewage bioreactors and in landfills. Methanoculleus marisnigri can use hydrogen, formate, and secondary alcohols, such as propanol and butanol, for methanogenesis. A metabolic feature of Methanoculleus species and some closely related genera, but unique among the methanogens, is the ability to use ethanol and a variety of secondary alcohols as electron donors for methanogenesis, and this may contribute to their dominance in biomethanation processes. (HAMAP: METMJ)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanomicrobiales
FamilyMethanomicrobiaceae
GenusMethanoculleus
SpeciesMethanoculleus marisnigri
StrainJR1

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Methanoculleus marisnigri JR1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature21
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceLithotroph
PathogenicityNo

Genome Summary

Methanoculleus marisnigri JR1, complete sequence.

Gene Summary

Adenine Count

468958 bp

Thymine Count

471156 bp

Guanine Count

768993 bp

Cytosine Count

768988 bp

Genome Length

2478101 bp

Protein-coding Genes

2465 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf47 domain-containing proteinMEMAR_RS05110Not AvailableNegative1021999 - 102262823828.5
duf1894 domain-containing proteinMEMAR_RS05115Not AvailableNegative1022807 - 102311511628.4
aminotransferase class v-fold plp-dependent enzymeMEMAR_RS05120Not AvailablePositive1023360 - 102599696818.7
formate dehydrogenase accessory sulfurtransferase fdhdMEMAR_RS05125Not AvailableNegative1026377 - 102710825174.4
voc family proteinMEMAR_RS05130Not AvailableNegative1027232 - 102769617856.1
coenzyme f420 hydrogenase/dehydrogenase, beta subunit c-terminal domainMEMAR_RS05135Not AvailableNegative1028086 - 102932444826.5
formate dehydrogenase subunit alphaMEMAR_RS05140Not AvailableNegative1029325 - 103139176118.0
fmde family proteinMEMAR_RS05145Not AvailablePositive1031713 - 103235424024.9
trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmoMEMAR_RS05150Not AvailablePositive1032412 - 103323029336.3
molybdopterin-binding proteinMEMAR_RS05155Not AvailablePositive1033247 - 103504663342.8

Displaying genes 1041 – 1050 of 2518 in total

Metabolites

305 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da

Displaying 1–10 of 305 metabolites

Health Effects

No health effects information available for this bacterium.