Yersinia similis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia similis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia similis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatenvironment
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia similis genome assembly 5139_1#4, scaffold

Gene Summary

Adenine Count

1293607 bp

Thymine Count

1292971 bp

Guanine Count

1143014 bp

Cytosine Count

1137818 bp

Genome Length

4867714 bp

Protein-coding Genes

4175 genes

Non-Coding Genes

203 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidinol-phosphate aminotransferaseERS008667_00398B2JZM8Positive432720 - 43386841886.0
imidazole glycerol-phosphate dehydratase/histidinol phosphataseERS008667_00399Q8ZFX7Positive433865 - 43493239877.8
imidazole glycerol phosphate synthase subunit hishERS008667_00400Q8ZFX8Positive434932 - 43552221302.9
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseERS008667_00401A7FJH4Positive435528 - 43626526649.0
imidazole glycerol phosphate synthase subunit hisfERS008667_00402B2JZM4Positive436247 - 43702328373.8
bifunctional phosphoribosyl-amp cyclohydrolase /phosphoribosyl-atp pyrophosphataseERS008667_00403Q8ZFY1Positive437017 - 43763122949.3
6-phosphogluconate dehydrogenaseERS008667_00404P14062Negative437850 - 43925951576.1
utp-glucose-1-phosphate uridylyltransferaseERS008667_00405P0AAB7Negative439671 - 44056432426.2
utp-glucose-1-phosphate uridylyltransferaseERS008667_00406P0AEP5Negative440630 - 44152032233.5
putative siderophore biosynthetic enzymeERS008667_00407Not AvailablePositive442469 - 44428369687.3

Displaying genes 571 – 580 of 4378 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

274 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 274 metabolites

Health Effects

No health effects information available for this bacterium.