Polaromonas naphthalenivorans CJ2

Gram-negativeCocciNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Polaromonas

Description

Polaromonas naphthalenivorans (strain CJ2) is a Gram-negative bacterium phylogenetically associated with the beta subdivision of the Proteobacteria. Polaromonas naphthalenivorans was isolated from naphthalene-contaminated, freshwater sediment. This organism is capable of aerobic degradation of naphthalene at temperatures of less than 20 degrees Celsius. Naphthalene is the simplest member of a class of important contaminants, the polycyclic aromatic hydrocarbons (PAHs). PAHs can be toxic and/or carcinogenic, therefore PAH contamination is of considerable concern. The ability of Polaromonas naphthalenivorans to degrade PAHs at low temperatures makes it a potential bioremediation agent. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusPolaromonas
SpeciesPolaromonas naphthalenivorans
StrainCJ2

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Polaromonas naphthalenivorans CJ2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete

Gene Summary

Adenine Count

36753 bp

Thymine Count

37333 bp

Guanine Count

48862 bp

Cytosine Count

48918 bp

Genome Length

171866 bp

Protein-coding Genes

165 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPNAP_RS27085Not AvailablePositive3228912 - 322922310838.9
ygjp-like metallopeptidase domain-containing proteinPNAP_RS15280Not AvailablePositive3229220 - 322972919593.8
beta-n-acetylhexosaminidasePNAP_RS15285Not AvailableNegative3229752 - 323081038245.4
holo-acp synthasePNAP_RS15290Not AvailableNegative3230876 - 323126814633.5
pyridoxine 5'-phosphate synthasePNAP_RS15295Not AvailableNegative3231268 - 323209830327.9
dna repair protein recoPNAP_RS15300Not AvailableNegative3232123 - 323287227637.5
gtpase eraPNAP_RS15305Not AvailableNegative3232921 - 323399439321.2
ribonuclease iiiPNAP_RS15310Not AvailableNegative3234050 - 323475125645.0
duf4845 domain-containing proteinPNAP_RS15315Not AvailableNegative3234752 - 323509312132.9
signal peptidase iPNAP_RS15320Not AvailableNegative3235163 - 323612836508.1

Displaying genes 3541 – 3550 of 5165 in total

Metabolites

1848 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 1848 metabolites

Health Effects

No health effects information available for this bacterium.