Haloquadratum walsbyi DSM 16790

SquareShapedNon-motile

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Haloquadratum

Description

A square, non-motile, pigmented halophilic archaea that dominates in most thalassic NaCl-saturated environments, reaching population densities of over 107 cells per ml, this strain was isolated from a Spanish solar saltern. The two unique features of these cells are the wafer like rectangular shape,usually between 2 and 5 micro m and a cell thickness of not more than 0.1 micro m. In their specific habitat these squares are challenged by the sub-lethal conditions of an extremely high MgCl2 concentration and high solar irradiance. This means that although the organism thrives in an aqueous environment it suffers severe desiccation stress. Special mechanisms are therefore required to maintain optimal water activity within the cell and at the cell surface. Concomitant with the extremely high salinity, the amount of dissolved oxygen decreases to near anoxia and some essential nutrients (e.g. phosphates) become unavailable due to complexation with Mg2+. It encodes the largest archaeal protein known to date, halomucin (9159 residues), which is similar to animal mucins. Animal mucins play an important role in protecting various tissues against desiccation or harsh chemical conditions. Halomucin is thought to be exported outside the cell, where it is may be glycosylated, sulfated and sialated; H.walsbyi is the first archaea identified that is probably able to synthesize sialic acid. These modifications, along with the potential capacity to synthesize and poly-gamma-glutamate capsule, probably create an aqueous shield and in the case of the capsule may also help maintain the unique shape of the cell. (HAMAP: HALWD)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHaloquadratum
SpeciesHaloquadratum walsbyi
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeSquareShaped
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhototroph
PathogenicityNo

Genome Summary

Haloquadratum walsbyi DSM 16790


Gene Summary

Adenine Count

817890 bp

Thymine Count

815270 bp

Guanine Count

745744 bp

Cytosine Count

753590 bp

Genome Length

3132494 bp

Protein-coding Genes

2842 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
cdc6/cdc18 family proteinHQ_RS00005Not Available+723 - 242663787.6
s26 family signal peptidaseHQ_RS00010Not Available-2461 - 331831406.5
dna-directed dna polymerase ii small subunitHQ_RS00015Not Available+3557 - 517959619.0
hypothetical proteinHQ_RS00020Not Available-5330 - 584218477.8
aspartate kinaseHQ_RS00025Not Available+6224 - 740241634.0
rna-guided endonuclease insq/tnpb family proteinHQ_RS16620Not Available-7520 - 76002812.44
imp cyclohydrolaseHQ_RS00030Not Available-8631 - 921821321.1
Trna-pseudoNot AvailableNot Available+9331 - 9403Not Available
keops complex subunit cgi121HQ_RS00040Not Available-9618 - 1011518177.6
atp-dependent dna helicaseHQ_RS00045Not Available-10112 - 1256589320.9

Displaying genes 1 – 10 of 2934 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

47 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 47 metabolites