Exiguobacterium sp. AT1b

Gram-positiveRodMotileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Genus

Exiguobacterium

Description

Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) is a non-spore forming Gram-positive bacterium isolated from a slightly alkaline and highly carbonate hot spring water of Angel Terrace, which is part of Mammoth Terrace, Yellowstone National Park. Exiguobacterium sp. is a facultative anaerobe but grows more profusely aerobically. It is able to grow from 15 to 50 degrees Celsius. The cells are rods about 2 um in length, with rounded ends. They occur singly, in pairs or infrequently in chains. Exiguobacterium sp. possesses high nuclease activity and are able to metabolize cellulosic materials. It is also involved in the carbon cycling in hot environments. Through analysis of the transcriptome, experiments can be designed to study microbial survival under a variety of high temperature and low temperature conditions. The issue of adaptations to different temperatures is of interest in the field of astrobiology. Organisms that inhabit such diametrally opposite environments may be used as models for understanding cellular responses on astral bodies. (Adaptated from: http://genome.jgi-psf.org/exi_a/exi_a.home.html). (EBI Integr8)

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Exiguobacterium sp. AT1b
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Exiguobacterium sp. AT1b, complete sequence.

Gene Summary

Adenine Count

772231 bp

Thymine Count

773838 bp

Guanine Count

727277 bp

Cytosine Count

726549 bp

Genome Length

2999895 bp

Protein-coding Genes

2978 genes

Non-Coding Genes

140 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydroxyacetone kinase subunit dhakEAT1B_RS03570Not AvailablePositive667859 - 66883634256.1
dihydroxyacetone kinase subunit dhalEAT1B_RS03575Not AvailablePositive668856 - 66944621168.1
dihydroxyacetone kinase phosphoryl donor subunit dhamEAT1B_RS03580Not AvailablePositive669457 - 66980712143.5
hypothetical proteinEAT1B_RS03585Not AvailableNegative669846 - 67035519019.9
trna (guanosine(46)-n7)-methyltransferase trmbEAT1B_RS03590Not AvailableNegative670461 - 67110825148.1
phosphotransferase family proteinEAT1B_RS03595Not AvailableNegative671393 - 67218730459.0
type i pullulanaseEAT1B_RS03600Not AvailableNegative672237 - 67440282225.3
nerd domain-containing proteinEAT1B_RS03605Not AvailableNegative674422 - 67526133308.1
rna 2',3'-cyclic phosphodiesteraseEAT1B_RS03610Not AvailableNegative675231 - 67580622599.0
mfs transporterEAT1B_RS03615Not AvailableNegative675812 - 67696341857.6

Displaying genes 711 – 720 of 3118 in total

Metabolites

111 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da

Displaying 1–10 of 111 metabolites

Health Effects

No health effects information available for this bacterium.