Yersinia pestis Antiqua

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia spp. are responsible for disease syndromes ranging from gastroenteritis to plague. Y. pestis is the cause of the plague and is actually catagorized into three subtypes or biovars; Antiqua, Medievalis, and Orientalis, each associated with a major pandemic. Y. pestis strand KIM belongs to biovar Mediaevalis while strand CO92 is in biovar Orientalis. Biovar Mediaevalis is thought to of descended from the bacteria that caused the second pandemic (the Black Death), while biovar Orientalis bacteria are responsible for the current pandemic (modern plague).It is believed that Y. pestis is a clone that evolved from Y. pseudotuberculosis about 1.5 to 20 thousand years ago. This means that Y. pestis has evolved rapidly from being a pathogen widely found in the environment, able to infect mammalian intestines, to a blood-borne pathogen of mammals that can parasitize insects and has a limited capacity for survival outside a host.Y. pestis is rod shaped, gram negative, and non-motile yet has two distinct flagellar gene clusters; one set is incomplete and the other has a truncated FldH, which is a transcriptional activator for the flagellar genes.Y. pestis uses aerobic respiration and anaerobic fermentation to produce and consume hydrogen gas for energy.Yersinia species are pathogens whose environments are not rich in minerals and grow at temperatures ranging from about 26oC to 37oC.Y. pseudotuberculosis and Y. enterocolitica both infect the intestines of mammals through the fecal-oral route (contaminated food and water) and rarely is deadly. Y. pestis, on the other hand, is transmitted subcutaneously through a bite of an infected flea or rat (bubonic), but can also be transmitted by air (especially during pandemics of the disease). More specifically, fleas become infected after taking blood meals from septicemic animals and becoming infected themselves. Y. pestis grows in the midgut and eventually blocks the proventriculus, starving the flea for blood. The insects attempt to feed more often but end up giving back infected blood into the wound of the bite. The flea eventually dies, presumably from starvation and dehydration. On an interesting note, when the temperatures get higher fleas do not have their proventriculus blocked, and only those that are blocked can transmit the disease. When held at 30oC, fleas survive infections in an unblocked state, possibly leading at an explanation of why human bubonic plagues ended after the onset of warmer temperatures.All pathogenic species of Yersinia contain the pCD1virulence plasmid. Y. pestis obtained two unique plasmids that encode a variety of virulence determinants. The pPCP1 plasmid encodes the plasminogen activator Pla, essential for virulence through the subcutaneous route. The pMT1 plasmid encodes murine toxin Ymt and the F1 capsular protein, which have been shown to play a role in the transmission of plague. Ymt, designated murine toxin because the protein is highly lethal for mice, is required for Y. pestis to survive in fleas. Ymt mutants, however, are as virulent as its parent in mice with plague.Researchers have also discovered that at rising temperatures cells gradually lose their ability to bind Congo red (CR) along with their ability to cause disease in mice from peripheral routes of infection. This is because in the pgm (pigmentation) operon there are genes encoding the yersiniabactin (Ybt) siderophore-dependent iron transport system, required for virulence in mice subcutaneously, as well as genes for the Hms phenotype, which is required for cells to colonize and block the proventriculus. A pgm deletion is therefore lethal to Y. pestis.(From http://microbewiki.kenyon.edu/index.php/Yersinia) (MicrobeWiki: Yersinia)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia pestis
StrainAntiqua

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia pestis Antiqua
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Yersinia pestis Antiqua


Gene Summary

Adenine Count

22972 bp

Thymine Count

25032 bp

Guanine Count

23654 bp

Cytosine Count

24813 bp

Genome Length

96471 bp

Protein-coding Genes

31 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
TransposaseYPA_RS21760Not Available+89 - 111139903.2
AttlNot AvailableNot Available+1003 - 1015Not Available
Transposase/is proteinYPA_RS21765Not Available+1108 - 189029427.8
Tail fiber assembly proteinYPA_RS21770Not Available-2024 - 263222600.4
Bacteriophage side tail fiber proteinYPA_RS21780Not Available-2934 - 582299467.3
Tail fiber proteinYPA_RS21785Not Available-5903 - 648121998.0
Putative phage tail proteinYPA_RS21790Not Available-6538 - 11169168532.0
Putative phage tail proteinYPA_RS21795Not Available-11191 - 1177821674.1
Putative phage tail proteinYPA_RS21800Not Available-11766 - 1256330314.7
Putative minor tail protein lYPA_RS21805Not Available-12556 - 1325426032.8

Displaying genes 1 – 10 of 4383 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

54 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da

Displaying 1–10 of 54 metabolites