Phocaeicola dorei

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei is a Gram-negative, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph, primarily in anaerobic environments. This species has an optimal growth temperature of 37.0°C, indicating a preference for body temperature conditions that may facilitate its presence in various host-associated environments. P. dorei has been identified in multiple habitats, suggesting a degree of ecological versatility, although specific habitats have not been detailed in the available data. Its anaerobic requirement indicates that it likely plays a role in anaerobic metabolic processes, which may include fermentation or other metabolic pathways that do not rely on oxygen. Given its anaerobic nature and ability to inhabit diverse environments, P. dorei may contribute to the complex microbial communities found in the gastrointestinal tracts of various organisms. This highlights the potential for significant interactions with host metabolism and nutrient cycling within those ecosystems. Further studies are warranted to elucidate the specific ecological roles and interactions of P. dorei in its native habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain AF14-1AC AF14-1AC.Scaf107, whole genome

Gene Summary

Adenine Count

1646125 bp

Thymine Count

1607159 bp

Guanine Count

1155492 bp

Cytosine Count

1197211 bp

Genome Length

5606424 bp

Protein-coding Genes

4603 genes

Non-Coding Genes

112 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorDWW04_14975Not AvailableNegative3593790 - 3596789112122.0
hybrid sensor histidine kinase/response regulatorDWW04_14980Not AvailableNegative3597106 - 3601056152136.0
galactose mutarotaseDWW04_14985Not AvailableNegative3601239 - 360237242553.4
beta-galactosidaseDWW04_14990Not AvailableNegative3602378 - 360419269216.2
ahpc/tsa family proteinDWW04_14995Not AvailableNegative3604810 - 360598844813.2
tlpa family protein disulfide reductaseDWW04_15000Not AvailableNegative3605996 - 360737251186.2
ragb/susd family nutrient uptake outer membrane proteinDWW04_15005Not AvailableNegative3607384 - 360877553222.6
susc/raga family tonb-linked outer membrane proteinDWW04_15010Not AvailableNegative3608794 - 3612288130523.0
fecr family proteinDWW04_15015Not AvailableNegative3612346 - 361342541346.0
sigma-70 family rna polymerase sigma factorDWW04_15020Not AvailableNegative3613498 - 361406422678.5

Displaying genes 2921 – 2930 of 23946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.