Phocaeicola dorei

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei is a Gram-negative, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph, primarily in anaerobic environments. This species has an optimal growth temperature of 37.0°C, indicating a preference for body temperature conditions that may facilitate its presence in various host-associated environments. P. dorei has been identified in multiple habitats, suggesting a degree of ecological versatility, although specific habitats have not been detailed in the available data. Its anaerobic requirement indicates that it likely plays a role in anaerobic metabolic processes, which may include fermentation or other metabolic pathways that do not rely on oxygen. Given its anaerobic nature and ability to inhabit diverse environments, P. dorei may contribute to the complex microbial communities found in the gastrointestinal tracts of various organisms. This highlights the potential for significant interactions with host metabolism and nutrient cycling within those ecosystems. Further studies are warranted to elucidate the specific ecological roles and interactions of P. dorei in its native habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain AF14-1AC AF14-1AC.Scaf107, whole genome

Gene Summary

Adenine Count

1646125 bp

Thymine Count

1607159 bp

Guanine Count

1155492 bp

Cytosine Count

1197211 bp

Genome Length

5606424 bp

Protein-coding Genes

4603 genes

Non-Coding Genes

112 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susf/suse family outer membrane proteinDWW04_08855Not AvailablePositive2159138 - 216029541909.4
duf5115 domain-containing proteinDWW04_08860Not AvailablePositive2160318 - 216173351145.4
alpha-amylaseDWW04_08865Not AvailablePositive2161865 - 216394678010.0
hypothetical proteinDWW04_08875Not AvailableNegative2165190 - 216617035243.8
peptidaseDWW04_08880Not AvailableNegative2166193 - 216804967217.1
hypothetical proteinDWW04_08885Not AvailableNegative2168317 - 216950444597.1
duf3109 family proteinDWW04_08890Not AvailableNegative2169572 - 217015322154.6
2,3-bisphosphoglycerate-independent phosphoglycerate mutaseDWW04_08895Not AvailableNegative2170256 - 217177055836.0
hypothetical proteinDWW04_08900Not AvailablePositive2171831 - 21720437742.58
gntr family transcriptional regulatorDWW04_08905Not AvailablePositive2172219 - 217319938083.7

Displaying genes 1801 – 1810 of 23946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.