Phocaeicola dorei

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei is a Gram-negative, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph, primarily in anaerobic environments. This species has an optimal growth temperature of 37.0°C, indicating a preference for body temperature conditions that may facilitate its presence in various host-associated environments. P. dorei has been identified in multiple habitats, suggesting a degree of ecological versatility, although specific habitats have not been detailed in the available data. Its anaerobic requirement indicates that it likely plays a role in anaerobic metabolic processes, which may include fermentation or other metabolic pathways that do not rely on oxygen. Given its anaerobic nature and ability to inhabit diverse environments, P. dorei may contribute to the complex microbial communities found in the gastrointestinal tracts of various organisms. This highlights the potential for significant interactions with host metabolism and nutrient cycling within those ecosystems. Further studies are warranted to elucidate the specific ecological roles and interactions of P. dorei in its native habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain AF14-1AC AF14-1AC.Scaf107, whole genome

Gene Summary

Adenine Count

1646125 bp

Thymine Count

1607159 bp

Guanine Count

1155492 bp

Cytosine Count

1197211 bp

Genome Length

5606424 bp

Protein-coding Genes

4603 genes

Non-Coding Genes

112 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinDWW04_07340Not AvailablePositive1726174 - 172786562940.1
beta-xylosidaseDWW04_07345Not AvailablePositive1728145 - 173060194019.7
beta-glucanaseDWW04_07350Not AvailablePositive1730627 - 173176942595.3
glycoside hydrolaseDWW04_07355Not AvailablePositive1732095 - 173309637760.4
ragb/susd family nutrient uptake outer membrane proteinDWW04_07360Not AvailableNegative1733216 - 173476958320.5
tonb-dependent receptorDWW04_07365Not AvailableNegative1734782 - 1737853113265.0
helicaseDWW04_07370Not AvailableNegative1738368 - 174088197182.2
rna polymerase sigma-70 factorDWW04_07375Not AvailablePositive1741085 - 174164522126.4
duf4974 domain-containing proteinDWW04_07380Not AvailablePositive1741719 - 174266336164.8
susc/raga family tonb-linked outer membrane proteinDWW04_07385Not AvailablePositive1742814 - 1746200124041.0

Displaying genes 1511 – 1520 of 23946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.